barSeed - Barley Seed Development Database

Probe CUST_41738_PI390587928

Source Contig U35_24039

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41738_PI390587928	Hv_44K_v2	CATATGCATCGATTGTTAAGGCCACAAATGAGAGCATACCACCAGCACCCATTACCAAAC	904	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.670	2.798	1.386	0.653	0.568	0.409
Raw	1191.323	720.426	403.323	254.267	90.024	72.859

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12178.1	2183	2e-24	880 - 939	100	60 / 60	plus	None
JLOC1	JLOC1_8161.1	2332	8e-25	958 - 1017	100	60 / 60	plus
Harvest21	ABC20399	964	3e-25	905 - 964	100	60 / 60	plus
Harvest35	U35_24039	964	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (964 bp)

>U35_24039 964 Hv_44K_v2
GGCTCCAACTGCCCCGCCCGCCACCCGCGCCGCCCGGCCGCTCCGCTAGGGTTTGCCCGC
CCTCCCGTCGCCGTCGGCCGTCGGCCCGCGCTCGGTCCGGAAGCAATGTCTATGCCAACT
GGGAATTTGTTTGGCCCTCCTCATCCCAATGTGATTGGGAATGCGTTTGCTCAACAATAC
TACAGAGTTTTGAATGGGTCACCAGAGCATGTCCATAAGTTCTATCATGATGAAAGTATC
CTTGGTCGACCAGATTCTGATGGTGCATTGGCATCTATAACCACTATGGATGCTATCAAT
GAACACTTCTTATCTACAGATCTGAAGGGCTGTTTGATACAGTTGGATAATGTAGATACT
CAGCCATCCCACGGGTGTGGTGTGATCATTTTGGTTACTGGATCTTTTACCATGCTTGAT
ACAGTGAAGCATAGATTTGCTCAGTCATTCTTCCTTGCTCCACAAGAAACTGGAGGCTAT
TTTGTTTTGAATGATGTGCTTCGACTTGCGCCGGAGATGCCATTGGCTGAGACAAACGAA
GCTTTAGTTGACCATGTTAATGGAAACACTCAGATTGCCCCATTTCTAGCTGAGCCAGAA
ACAACATCTGTCAAGGAGAGCATGGACCCAGAGCTTCCATCTGCAGGGAATATTTCCACC
AATGGCGAAGTCATAAATCCATCTGCAGAGATGATTCCTGTGGATGCTGAAGTCATAAAT
CTATCTGCAGAGAATGTTTCCATCAATGATGAAGTCATGGATCCGTCTATAGAGACTATT
TCTATCAAGGAGAAAGTCATAAATTCATCTGGAAATGAAAATTCTCAAATTAAGAATGAT
GCTATTAAGATACCTGAGGCAGTACCTACTCCTGCTTCAGGTCAGAAGGATTTTATCAAG
AAGACATATGCATCGATTGTTAAGGCCACAAATGAGAGCATACCACCAGCACCCATTACC
AAAC

Homology of Contig U35_24039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g41180.1	570	2e-67	protein\|RNA-binding protein-like, putative, expressed
Brachypodium v1_2	Bradi1g22160.1	590	1e-112
Arabidopsis v10	None