barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_41735_PI390587928Hv_44K_v2AGATTGAACTGCGCAATTTGTCATTCGATTACATTTGAAACGAAATCTGCTCCTCTTTCG541GeneList: lightgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2300.3570.5271.9432.4594.738
Raw 90.431221.365287.8821590.807716.2581540.013



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_48070.19378e-25791 - 85010060 / 60plus
Harvest21ABC523896013e-25542 - 60110060 / 60plus
Harvest35U35_503046013e-25542 - 60110060 / 60plus



Contig Sequence (601 bp)

>U35_50304 601 Hv_44K_v2
ACTGTAAGCTACACACATCTTCGATCGCGTACGTACCTCAGTACGTGGTGTCGACGACGA
CCGCCGTCATCATCGGCGGCCAGTTGAGCTGGTTTAGTTCTTGGGGAAATGGGCAACGTG
GTGGAGGCGGCGGCCGCGATCTCGCCGGAGCTCGGCGACGCGCTGGCCAAGGTGGCCGTG
TTCGCGCTCGTGCAGGGGCTGGTCTACCTCATCCTGCGCAAGTCCTCGGACGTCTTCTCC
ACGGCCAGCGCGGCGAGGTCCCTCAGCTTCCGGCCCATGCGGAGCATGAGCGTCCGGCGC
GTGCTGGCGGCCTTCTCCGACGTCCCCGTCGGCGTTCCCGACGATGCCGGCTCCTCCTTG
CCGCCGCCGGCGCCGCAGACTGGTGATGCTGACCGGAGGGCAGACTAGTTGAAGTGTTCT
GGTTGTGTTCAGCTAATATATGTAGCGAGTACTGCGTGCTTTCTTAGGTATGGTTATTAC
TAGGGATTGTTCTTAGGAAATGATTGTACGACGAGCATAAGAAAGTTTGTGCATGTACAG
TAGATTGAACTGCGCAATTTGTCATTCGATTACATTTGAAACGAAATCTGCTCCTCTTTC
G



Homology of Contig U35_50304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None