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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_41733_PI390587928Hv_44K_v2CTCAACTGGAAGGTACTATGTGGTTAACAAACATGGGGGAATTTCTAGCATTTTGTTTCT622GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1471.4591.3700.9660.3700.299
Raw 282.572563.311456.550507.89268.13460.714



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_80127.136193e-222274 - 23329859 / 60minus ABC20300
MLOCMLOC_80127.234553e-222274 - 23329859 / 60minus ABC20300
JLOC1JLOC1_53361.114381e-221124 - 11829859 / 60plus
Harvest21ABC523906823e-25623 - 68210060 / 60plus
Harvest21ABC203007915e-23710 - 7689859 / 60plusABC20300
Harvest35U35_503056823e-25623 - 68210060 / 60plus
Harvest35U35_335719155e-231148 - 12069859 / 60minus



Contig Sequence (682 bp)

>U35_50305 682 Hv_44K_v2
GTCCGGGCCCGCCCGGACGCCCAGCATCCCGAGTGGCGCCGTCGTGACGCCCTTGTCGCG
TCCATCCTCGCATCCGATCACCTCGCCCACCGCGAGTTCGACGTTGCCCTTGCCCTCGTC
GCTGAACTCGTCGCCCGTGAGCCGGACAACCCGGTCCTGCTCTCCCGCCTCGCCTATGCC
CACCTCCAGATCGGCAACCTCGCTGCCGCCTCGGCGGTCTTCCAACACGTTGAATCCGTT
GTGGCCGGCGACTCCTCTCACGACAATCTCCTGTCTCGCAACCGCGCGCTCGAGTGCATC
GTGGCTAAGGACTATGCCGCAGCGGTGCGGGAGTACGAGCGCTGCATTGAGGCTGACCCT
TCTGACGCCATCGCCTTGAACAACAAGGCGCTATGCCTCATGTACTCGCGGGACCTCGGC
GATGCCATCAAGGTGCTCGAGGGCGCCCTGGAGACGATGCCCACGGCGGCCCTCAACGAG
ACAGTGGTGGTCAACTTGTGTAGCATGTACGAGCTTGCCTTCGTCAACCATGGTGAGGTC
AAGCGAACCCTTGCCGATTGGATCACCAGGGTGGCACCAGATGACTTCGACAAGTCCTGC
ACACGCATGTAGGAGTGACTTGCTCAACTGGAAGGTACTATGTGGTTAACAAACATGGGG
GAATTTCTAGCATTTTGTTTCT



Homology of Contig U35_50305 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g34540.13312e-108protein|tetratricopeptide repeat containing protein, putative, expressed
Brachypodium v1_2None
Arabidopsis v10AT4G39820.14082e-67Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18476698-18477924 REVERSE LENGTH=408