barSeed - Barley Seed Development Database

Probe CUST_41722_PI390587928

Source Contig U35_12060

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41722_PI390587928	Hv_44K_v2	TGAACCTGATAATGGGAAAAGAGAGCAATGAGCCAGATGGAAATTCAGAATTTGAAGCTG	716	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11261.1	2890	2e-24	2808 - 2867	100	60 / 60	minus	ABC17190
JLOC1	JLOC1_7444.6	12121	8e-25	9954 - 10013	100	60 / 60	plus
JLOC1	JLOC1_7444.5	12034	8e-25	9867 - 9926	100	60 / 60	plus
JLOC1	JLOC1_7444.4	11453	8e-25	9286 - 9345	100	60 / 60	plus
JLOC1	JLOC1_7444.3	11495	8e-25	9328 - 9387	100	60 / 60	plus
JLOC1	JLOC1_7444.2	10619	8e-25	8452 - 8511	100	60 / 60	plus
JLOC1	JLOC1_7444.1	11453	8e-25	9286 - 9345	100	60 / 60	plus
Harvest21	ABC24309	813	3e-25	717 - 776	100	60 / 60	plus	ABC24309
Harvest35	U35_12060	813	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (813 bp)

>U35_12060 813 Hv_44K_v2
CGAGGCGTCTGGACTGCATTCCAGTAACAGCACAGATACTAAAATGGATGATACCATGAG
CCCAAGTGCAGAAATGATACATGGAAGGATCGATAAACAGCCCACAGAAATTGAAGAGGT
GGAGGAAAACAAGGGATTCAGTTCCATTTCAGAATATGTGGTGGAAAATCCTAAACAGAA
TGATGTTGAGCAGGACTTGAGCACTCGTCCAAAGGTTGTAGATGACAAGTTGGCAACAGA
GCAGAATGGTGCAGAAGTTGAAACTGACTCGAATGAGGAAATAGCGACTGGCTATACAGC
ATCCACTGAATCAACCAAACTCGGTGAAGCTATCTATGATAAGGCTAGTAGAGCTGATGG
GGCACTATCTGATGAAAATCTCGAGACCATCGAGGAGAACGGAAGGAATCTTGAGGCTTC
ACCTGCAGTTACAGCAACAGGAGAAAGTATAAACGAAGACAATGAACATCATAAGTTTGA
TCTTCGTGCACACTCCGCCGTGGACAGAAATGAAACTGAACAGGCATCTGAGTTAGAGGT
GACAGAAAGAGAGTTGTTTCTAGAGAAGCCACTCCCCACCGAATCAGAAGAGCAAGAAGA
GAATCAAATAACCAAAGAACAAGGTGAAGAGAACATACAAGAGCAAGAAACTGGTGACAC
GGAGAAAGAAGAAAACGAAGCTGAACAAAGTGATTTGCCTGTCTCCCATTTTCTGATGAA
CCTGATAATGGGAAAAGAGAGCAATGAGCCAGATGGAAATTCAGAATTTGAAGCTGAAAA
AAAAAAAAANAANAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_12060 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g02910.1	2964	1e-94
Arabidopsis v10	None