barSeed - Barley Seed Development Database

Probe CUST_4171_PI390587928

Source Contig U35_2411

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4171_PI390587928	Hv_44K_v2	TAGAAGGTGTACAGGGTACTTGGTAATGTGCACTCTTGAATCATCAGTACCTCGCATAAA	1033	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.430	0.880	1.585	2.099	1.050	0.854
Raw	143.265	458.377	732.536	1499.899	267.674	234.486

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62525.2	1296	6e-24	1220 - 1278	100	59 / 59	plus	ABC07208
MLOC	MLOC_62525.1	1164	6e-24	39 - 97	100	59 / 59	minus	ABC07208
JLOC1	JLOC1_40920.1	1344	3e-24	1153 - 1211	100	59 / 59	plus
Harvest35	U35_2411	1161	3e-25	1034 - 1093	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_2411 1161 Hv_44K_v2
AAAGAATCCTCACTAGAGGGCTGCTCGTACCACCACCAGCTATCGCGAGGCTCCCCACCC
TGCGCTCCCGTCACCTCGGCTTTCTCCCAAGATCCTGCAGACCCGGCTCGTCTCGAGTAA
CCGCCGCCATGTCGTCGTCGTCGTCGTCACCGATCCGTCGCTGGCGACCGAGGCGCCCCA
GGCGGCCGTCACCAGAGAGCGGAAGCTCAACCCCGACCTGCAGGAGCAGCTCGCCAAGCC
ATATCTGGCTCGAGCAATGGCGGCGGTTGACCCGAGCCACCCGGAGGGCAGCAAGGGGAG
GGACACCAAGGGCATGAGCGTGCTCCAGCAGCACGCCGCCTTCTTCGACCGCAACGGCGA
CGGGGTAATCTACCCATGGGAGACCTTCCAAAGCCTGCGAGCGATCGGGCTTGGGTCCCC
TTCAGCCTTCGGAACATCCATACTCCTCCACCTCGTCCTCACTTATCCTACTCAACCGGG
GTGGATGCCTTCCCCTCTGCTTTCAATCCATATAAAGAACATCCACAGGGGCAAGCATGG
GAGCGATTCTGAGACGTATGACACTGAAGGGAGGTTTGAACCAGCAAAATTCGATGCTAT
ATTCAGCAAGTTTGGCCGAACTCGGCCGAATGCTTTGTCAGAAGATGAGATTAACGCCAT
GCTTAAACACAACCGTAATATGTATGATTTCCTGGGCTGGGCCGCAGCCAACCTCGAATG
GAAGTTGCTGCACAAGGTGGCAAAGGATAAAGAAGGCCTTTTGCAGCGAGAAATCGTGAG
GGGCGCCTTCGATGGCAGCCTGTTCGAGCGCCTGCAGGAGAGCAAGAAATCTTCCTGAAT
GCGGCAGTGAGCCGCGCGCAGTCGAGACCGAGTGTCGTCTATGAAACAGCTGCACTTGAA
ATTTGAAAAGCCTCCCTGTAGTTTGAGTTGTGTGTACGTCGAATAAGAAGTGCTCGGCCC
GTCTACGGCGGCCTAAACATTTTCATCTGTCTTCATATTTGGAACTGGAATTTGTACTGT
TATTGGTAGCACATAGAAGGTGTACAGGGTACTTGGTAATGTGCACTCTTGAATCATCAG
TACCTCGCATAAAAAAAAAAAAAAAGTCGGAGAGGAACTTTTGGTCTATGGTGTACTCCC
TCTATACCTATATAATTATAG

Homology of Contig U35_2411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12230.1	272	3e-130	protein\|caleosin related protein, putative, expressed
Brachypodium v1_2	Bradi1g69571.1	234	1e-142
Arabidopsis v10	AT2G33380.1	236	8e-78	\| Symbols: RD20, CLO-3 \| Caleosin-related family protein \| chr2:14144984-14146374 REVERSE LENGTH=236