barSeed - Barley Seed Development Database

Probe CUST_41715_PI390587928

Source Contig U35_13186

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41715_PI390587928	Hv_44K_v2	TTATGTACGATAAGCTGAAAGACACAAGCTTCCCGGTCTTCTTAGCTCTAGTCGTGGTGA	456	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51377.1	1765	2e-24	399 - 458	100	60 / 60	plus	ABC17933
MLOC	MLOC_51377.2	1724	2e-24	305 - 364	100	60 / 60	plus	ABC17933
JLOC1	JLOC1_32820.1	1709	8e-25	305 - 364	100	60 / 60	plus
Harvest21	ABC25054	573	3e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_13186	573	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_13186 573 Hv_44K_v2
CGACGGCGAGGGCCCTCTCTCCCCCCTATATACCCTAGATCCTCCACCCACCTCGGTACG
TAGCGCGACCCAGCCGCCGGCCACCGCCGTAGATGGAGCCCGGGGAGGAGGCGGGGAGCG
CCGGCCATCTCGTGCCTCTCCTCGACGACCACGGCGGCGGCGGCGGCGGTGGCTTGGACG
CGTCCCTCCTGCGCCGCCTCTACGTCGGCCACTTCCTCGCCAGATGGGGTGCACGTATGT
GGGAGTTCTCCGTGGGGCTGTACATGATCCGCATCTGGCCGGGCTCGCTGCTCTTGGCGG
CCGTCTACGGCGTCGTCGAGTCCTCCTCCGTCGTCGTCTTCGGCCCCATGGTTGGCGCCC
TCGTCGAGAGGCTCACGTATCTGCAGGTATTGGGCCTATGGCTGCTGGTTCAAAGCTTAT
CCTTCATCACTGCTGGACTCTCAGTAACAGCACTGCTTATGTACGATAAGCTGAAAGACA
CAAGCTTCCCGGTCTTCTTAGCTCTAGTCGTGGTGACTAACCTGTCGGGCGCGCTCGCAG
CGCTCTCAACTCTTGCCGGCACCATACTGATTG

Homology of Contig U35_13186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g37907.1	505	2e-61
Arabidopsis v10	None