- Probe CUST_41714_PI390587928
- Source Contig U35_49115
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41714_PI390587928 | Hv_44K_v2 | AATGTGCTGAATGTCTCTTGCAAGCTTTGATCAATGATGATGTGCTTAACTGCTAAAAAA | 11 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.408 | 2.364 | 1.323 | 0.949 | 0.435 | 0.373 |
| Raw | 23.976 | 67.754 | 29.800 | 35.711 | 3.970 | 3.222 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357694 | 1682 | 3e-21 | 1247 - 1300 | 100 | 54 / 54 | plus | None |
| Harvest35 | U35_49115 | 400 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (400 bp)
>U35_49115 400 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGCAGTTAAGCACATCATCATTGATCAAAGCTTGCAAGAGACA TTCAGCACATTGTAACCGTGTATCACCTTATCAAGCACCTTCTTCAGTAGGCTTCAAGAA GGCCGGCGGCCACGCTATCGTGTAAGGGTATATCAGCGGGGACGGGCAACCCTCGTTCAG AGACAGCCTCGTCATCTTCATGGTCTCGAGATGAATGGAGAAGAGACAACTGCCATTGCG CAAGAACACAACACCAGCAGCCACCCCGATGACATCCAGTGTGAGATGGTAAAAGTGTTC CGAGCCAATCATCTCTGCAATCGCCCTGTGGAACCTGACCGACTTGTCCACCAGCGTCCA CGCCAGGCCACCGGCGCCGTCGTCCTGGCCGGCCCAAACC
Homology of Contig U35_49115 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |