barSeed - Barley Seed Development Database

Probe CUST_41711_PI390587928

Source Contig U35_13188

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41711_PI390587928	Hv_44K_v2	TAACTGAACATGAGCAGGATGTGTGTGTGAAGCAAGCTGTTATGATACTATTATTAATCT	606	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43780.4	1870	2e-24	737 - 796	100	60 / 60	plus	ABC12966
MLOC	MLOC_43780.7	1615	2e-24	728 - 787	100	60 / 60	plus	ABC12966
MLOC	MLOC_43780.1	1615	2e-24	735 - 794	100	60 / 60	plus	ABC12966
MLOC	MLOC_43780.2	1681	2e-24	735 - 794	100	60 / 60	plus	ABC12966
JLOC1	JLOC1_28315.4	1914	8e-25	730 - 789	100	60 / 60	plus
Harvest21	ABC23206	666	3e-25	607 - 666	100	60 / 60	plus
Harvest35	U35_13188	666	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_13188 666 Hv_44K_v2
GGCCAGGCCTCTGCCCAGCAGCATCTCCTCTTACAAGGGCTCTTCGGACGAGTTCATCGA
TGCCAACGTCCAGCTTGCTCTCGCTGTTGTAAGGGACCTCAAGAAGCTCAAGGGGACTCG
GTCCTGCATATCCATTCCAGGTGTTTCCTGATCAACCAGAGAAGCGAAGGGCCGCGCAGA
TATTCAAAACGGCTATAGATCAGATCGAGGGTATATCAATCGGTTCACTGGATGATCTGC
CCACCGGGCCTGTCGATACCTTCTTCAAATCGATAAGAATTACCCTTGATTTCGATTTTT
CTGATGACAACGAAGGTAAGATCTGAGGAAGCCCTGTCTAATATGGTGACACCAAAAACA
CCAATTTCCTTTGCTCCGGGGAGCTGCTGGTGCTAATGAATCTGCTGACTGTACTGAAAA
TTACATTTTTTTATGCCCCTTCTCTGCATTGATGTTTGCTCTATACAGGACCTAACTGAA
TCTTGCCGAGCGCTTTGTAGCAGGCTGAATAACGTTGATATGCTAACATCTTTTTGTGTA
GTTCCCTAGTTGACAAAATATTTTCATGTTAATTTATCATCAGTTCAAAGAGTGGAAATA
AAAGGATAACTGAACATGAGCAGGATGTGTGTGTGAAGCAAGCTGTTATGATACTATTAT
TAATCT

Homology of Contig U35_13188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None