- Probe CUST_41702_PI390587928
- Source Contig U35_25167
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41702_PI390587928 | Hv_44K_v2 | CAGGGTAATGTTTTTGCCCAATAAACTTATTAACAGCAACAGGTCTGTAAGCCGAAAAAA | 382 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.044 | 0.086 | 0.971 | 1.516 | 1.145 | 1.208 |
| Raw | 12.388 | 39.210 | 404.574 | 966.226 | 256.353 | 298.038 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC37246 | 375 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC37246 |
| Harvest21 | ABC37284 | 453 | 2e-21 | 12 - 71 | 95 | 57 / 60 | minus | ABC37284 |
| Harvest35 | U35_25167 | 453 | 3e-25 | 383 - 442 | 100 | 60 / 60 | plus |
Contig Sequence (453 bp)
>U35_25167 453 Hv_44K_v2 AGGCGATGCGGTGGCTGTCCTCCAGCAATCAAGACGCGCTCGGCGGAGACAGCTCGTACG AAAGCACGCCGCTGTCGTCGTGCGACCGGACGCCGCTGAGCAGCGTGACGACCGTGGACT TGCACGCCTGTGCGCGCCCCGGGGAGGCGCCCTCCACCCCAAGGCTGGAGGCGAAAACTC GGCTGGCGAGGTCCAAAAGCGACAATGGCGCCTCCTTCAGGCGGGAGGCGACCAGGTACC ACGCTCTCCGGCCGGACCGCCCGGCCGGTCCCGGGACAAACGGGTTCCACTCGCCCGAAA AAAATAAAAGGTACTCAGACGAGTTGAAAAGCTCCTGATCAATACTCCTATGTTGGTGCA TGGGACGCTTTCCTGCACCCTGCAGGGTAATGTTTTTGCCCAATAAACTTATTAACAGCA ACAGGTCTGTAAGCCGAAAAAAAAAAAAAAAAA
Homology of Contig U35_25167 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |