- Probe CUST_41699_PI390587928
- Source Contig U35_37140
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41699_PI390587928 | Hv_44K_v2 | TCATCCAATAGCATAGAGGGAGATAACACAACTGAGGAGACACCTGCATTTTCTACTCCT | 568 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.149 | 1.114 | 1.241 | 0.978 | 0.405 | 0.454 |
| Raw | 97.287 | 145.718 | 143.569 | 182.615 | 26.084 | 31.676 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362230 | 3158 | 2e-24 | 2447 - 2506 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_81660.2 | 1390 | 2e-24 | 833 - 892 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_81660.3 | 1389 | 2e-24 | 833 - 892 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_81660.4 | 1763 | 2e-24 | 543 - 602 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_81660.1 | 2634 | 2e-24 | 1417 - 1476 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_54315.1 | 2608 | 8e-25 | 1160 - 1219 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32798 | 632 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37140 | 632 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus |
Contig Sequence (632 bp)
>U35_37140 632 Hv_44K_v2 GCAGGAAATAAGTACTGCTCGTGCTATCAATGATGGAAGTTCTCCTCGATTAGCCACGCT GAGCTTCAGCAGCGATTCTCTTAGGAAATTACTTTNCCACAGGAAAAAAATTGAGCAAGA TACAGGTGCACGGGTATCTGTTAGTGATGGTACAGTCACTATTGTTGCTAAAACTCAGCC AATTATGGATAAGGCTATTGAGAAGGTTGAATTTCTTGTGGGTCGTGAAATTGAAGTTGG CAAGACATACAAAGGAATTGTTTCCTCAATAAAGGAGTATGGCGCTTTTGTGGATTTCAA TGGTGGACAGCAAGGTCTTCTTCACATTTCTGAGCTATCACATGAACCGGTTTCAAAAGT CTCGGATATTATATCTGTTGGCCAAGCGCTCTCATTGACATGCATTGGACAGGACGTGAG GGGTAATATTAAACTTTCACTCAAAGCAAACCATCCCCATCGGCCTGCAAAGGAGTTAGC AAGTGAGGATGCTACTTTTTTGCCAAGTCAAGACCTTGTTGGTTGGGCCGCCGTTGAGAA CATGCCCAGCAAGGATGCTGATGTCAAGTCATCCAATAGCATAGAGGGAGATAACACAAC TGAGGAGACACCTGCATTTTCTACTCCTGCAG
Homology of Contig U35_37140 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g40460.1 | 376 | 2e-111 | protein|S1 RNA binding domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g48860.1 | 977 | 3e-110 | |
| Arabidopsis v10 | AT5G14580.1 | 991 | 5e-54 | polyribonucleotide nucleotidyltransferase, putative | chr5:4697612-4703013 REVERSE LENGTH=991 |