- Probe CUST_41694_PI390587928
- Source Contig U35_37146
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41694_PI390587928 | Hv_44K_v2 | AGAGAATCACAATTCGTGAAATTCGAAAACACCCATGGTTTCAGAGTCGCCTTCCTCGCT | 376 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.258 | 0.482 | 0.986 | 1.477 | 1.189 | 1.411 |
| Raw | 26.088 | 71.313 | 141.075 | 302.064 | 93.047 | 118.260 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4424.1 | 2737 | 2e-24 | 1190 - 1249 | 100 | 60 / 60 | plus | ABC06240 ABC06241 ABC53017 |
| MLOC | MLOC_4424.6 | 476 | 2e-24 | 281 - 340 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4424.4 | 1251 | 2e-24 | 946 - 1005 | 100 | 60 / 60 | plus | ABC06240 ABC53017 |
| MLOC | MLOC_4424.7 | 2116 | 2e-24 | 289 - 348 | 100 | 60 / 60 | plus | ABC06240 ABC06241 |
| MLOC | MLOC_4424.2 | 2129 | 2e-24 | 1180 - 1239 | 100 | 60 / 60 | plus | ABC06240 ABC06241 ABC53017 |
| MLOC | MLOC_4424.3 | 3099 | 2e-24 | 1272 - 1331 | 100 | 60 / 60 | plus | ABC06240 ABC06241 ABC53017 |
| JLOC1 | JLOC1_2752.3 | 2100 | 8e-25 | 1048 - 1107 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2752.2 | 2151 | 8e-25 | 1099 - 1158 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2752.1 | 3029 | 8e-25 | 1099 - 1158 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32811 | 488 | 3e-25 | 377 - 436 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37146 | 488 | 3e-25 | 377 - 436 | 100 | 60 / 60 | plus |
Contig Sequence (488 bp)
>U35_37146 488 Hv_44K_v2 GGCCACAGAAACATGGTAGTTCATCCTGATCTAAAGCCATAAAACCTGTTACTTGATTCC AAATATAATGTGAAACTTGCTGACTTTGGGTTAAGTAATGTCATGCATGATGGCCATTTT TTGAAGACTAGCTGCGGGAGTCTAAACTATGCTGCGCCAGAGGTTATCTCAGGTAAATTG TACCCTGGACCTGAGATTGATGTTTGGAGCTGCGGGGTGATACTTTATGCTCTTGTCTGT GGTGCTGTTCCATTTGATGATGACAACATTCCCAACCTGTTCAAAAAGATAAAGGGAGGT ACCTATATCCTTCCAATTCATTTATCTGATCTTGTAAGGGATTTGATCCCAAGAATGCTT GTTGTTGATCCGATGAAGAGAATCACAATTCGTGAAATTCGAAAACACCCATGGTTTCAG AGTCGCCTTCCTCGCTACCTGGCAGTGCCTCCACCAGATATGGCGCAGGAAGCCAAAATG ATTGATGA
Homology of Contig U35_37146 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g17980.2 | 509 | 4e-98 | protein|CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| Brachypodium v1_2 | Bradi1g65630.3 | 391 | 1e-100 | |
| Arabidopsis v10 | AT3G01090.2 | 535 | 2e-92 | | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-34143 REVERSE LENGTH=535 |