barSeed - Barley Seed Development Database

Probe CUST_41681_PI390587928

Source Contig U35_49123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41681_PI390587928	Hv_44K_v2	GGTCGTTTTGGTTGTATCTGTTGTTTTGTTGATCTTATATAAACCATACTTATGAGGCCT	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57846.1	863	2e-24	128 - 187	100	60 / 60	minus	ABC03031
JLOC1	JLOC1_37566.1	1838	8e-25	1719 - 1778	100	60 / 60	plus
Harvest35	U35_49123	436	3e-25	23 - 82	100	60 / 60	minus

Contig Sequence (436 bp)

>U35_49123 436 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTACAAGGCCTCATAAGTATGGTTTATATAAGATCAACAAAAC
AACAGATACAACCAAAACGACCCTAAACAAATACGAGTAGGAAATTACAAATACGACTAC
AAGGCTCTAGAATAATTGCTGAATCCACGGCTGGACTGAACGGGGCAGTGCTAATCAAAC
CAATCTAGCACTGAAACAAACACTATCAAACGAAATTCCACGGTCGACAGCACAGGCAGC
CATGCCCTGTGATCTGATCCGCCCATGTGGTCAATCAGGCCACCAGACCAAAGCTGTTGG
GTTATCCTCTTCTCTGATAAAAAAAAGGAGAATCCAAAGCCACAAAGCAACAACAAAAAC
AAAAACAAATGCAACAGGAAGCAAACGGTACAATAGTTATATAATAATTTAACAGCAGAT
GGCAATGGTAAATGAA

Homology of Contig U35_49123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None