barSeed - Barley Seed Development Database

Probe CUST_4167_PI390587928

Source Contig U35_2415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4167_PI390587928	Hv_44K_v2	ACTGTCGAGGTGTCCTGTGAACTGTGAAATAAGCGGTACTGTATTGCTGCTACTAGTCTA	1863	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251409.1	1983	2e-24	1922 - 1981	100	60 / 60	plus	ABC06274
MLOC	MLOC_19217.4	1780	2e-24	1606 - 1665	100	60 / 60	plus	ABC06274
MLOC	MLOC_19217.3	1710	2e-24	1622 - 1681	100	60 / 60	plus	ABC06274
MLOC	MLOC_19217.1	2269	2e-24	2095 - 2154	100	60 / 60	plus	ABC06274
MLOC	MLOC_19217.2	1701	3e-21	1648 - 1701	100	54 / 54	plus	ABC06274
JLOC1	JLOC1_13333.1	1897	8e-25	1649 - 1708	100	60 / 60	plus
Harvest21	ABC06274	1992	3e-25	1864 - 1923	100	60 / 60	plus	ABC06274
Harvest35	U35_2415	1994	3e-25	1864 - 1923	100	60 / 60	plus

Contig Sequence (1994 bp)

>U35_2415 1994 Hv_44K_v2
GCTCGTCGCCCCGTGACAGCGCAGCGCAGCAGCAGCAGCAGCAGCAAAACCTCGTACCCG
CCCATGGCGTCCCACATCATCCTGCCGCCGGACGACGAGCAGCAGCGGAGGGAGGACGAG
GAGCAGGACGGCGGCGCCGCCGGGGGCGGGGAGCAGCAGCAGCCGCCCTTCTCCGCCATG
TGCGTGCGGATCTCCCGCGACTCCTACCCCAACCTCCGCGCCCTCCGCAACGCCTCCAAC
GTCAGCCTCGCCGACGCCGCGCACGTCAAGATCTCCGAGGGCGACTTCGGCTACGTCCTC
GACGACGTGCCCCACCTCGCCGACTACCTCCCCGACGTCCCCACTTACCCCAACCCATTA
CAAGACCACCCAGCATATTCAACTGTCAAGCAATATTTTGTCAATGAAGATGACACCGTA
CCACAAAAGGTTGTTGTTCAAAAGAATAGCCGGCGGGGGGTTCACTTCCGTCGTGCTGGA
CCCCGTCAGAGGGTTAATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGA
GGCCTTTGCCCTGGGCTCAACACTGTTATCAGGGAGCTGGTGTGTGGTTTGTCGCACATG
TACAATGTCAACAAAATCTACGGAATACAGAATGGATACAAGGGGTTCTATTCTAGCAAT
TATGTTGCTATTACACCAAAGACAGTCAATGACATCCACAAAAGGGGTGGTACAGTCCTT
GGAACATCACGAGGTGGTCATGACACAAAAAAGATCGTTGACAACATTCAGGATCGGGGA
ATTAATCAGGTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTAC
AAGGAAATCCGGAAGCGTGGCCTCAAAGTTGCTGTGGCCGGGGTTCCCAAGACAATAGAC
AATGACATAGCGATTATCGACAAGTCCTTTGGTTTTGATTCGGCCGTTGAAGAGGCTCAA
CGTGCCATTAATTCAGCTCATGTGGAAGCTTGCAGTGCTGAGAATGGAATAGGCCTGGTA
AAACTGATGGGTCGTTATAGTGGGTTCATTGCAATGTATGCTACCCTTGCAAGTCGGGAT
GTGGATTGCTGCTTAATTCCGGAGTCTCCGTTTTATATGGATGGAGAAGGGGGGTTGCTT
CAATATGTAGAAAGGAGGCTGAAAGAGAACAAGCACATGGTTATTGTTGTTGCTGAGGGA
GCAGGCCAGGATATTATTGCCAAAAGCATTCCCGCTTCAGATCAGCAAGATGCATCTGGA
AATAAATTGCTTCTTGATATTGGTCTCTGGTTGACTCACAAGATTAAGGATCATTTCAAG
AGCAAAAAGATGGAGATGACGATTAAATATATTGATCCTACCTACATGATCCGAGCTATT
CCAAGTAATGCAGCGGACAATGTCTACTGCACATTGCTGGCTCACAGTGCCATCCATGGT
GCAATGGCGGGATACAGCTCTACTGTTGGGATGGTCAATGGCAGACATGCCTATATACCT
TTCTATAGGGTGACATCCACACGGAACAAGGTGAAGATCACTGACCGGATGTGGGCGAGG
CTGCTGTCGTCGACCAACCAGCCAAGCTTCCTGAGCCAGAAGGACATCGATGAGGCCAGG
GAGGCCGATAGGCTGGCCAACAAGCCGCCGCTGCCATCTGTCGCCAACCACAATGTGGCG
AACGCCTTTGACCAATCTGCGTCGGCGTCGTCGAACTGTGAGATATAGTGACCGCAGCTG
GTCTGTAATCGTGTACAGTAGCTACTGCTATCCTGCTGAGAAACCTGCGCCACGCCACGC
CACGCAGTTTTGTTTCGATATGGATGTCCCTTTATGTAGGAACTAGTACTAATGTACACG
GATACTGTCGAGGTGTCCTGTGAACTGTGAAATAAGCGGTACTGTATTGCTGCTACTAGT
CTACTACTAGTGATATTGTGCTCCCTTTTTGCCCTGGCAAATTGTTGCATTTCCTACAAA
AAAAAAAAAAAAAA

Homology of Contig U35_2415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g44922.1	568	protein\|6-phosphofructokinase, putative, expressed
Brachypodium v1_2	Bradi2g19326.2	554
Arabidopsis v10	AT4G26270.1	489	\| Symbols: PFK3 \| phosphofructokinase 3 \| chr4:13301094-13304030 REVERSE LENGTH=489