barSeed - Barley Seed Development Database

Probe CUST_41666_PI390587928

Source Contig U35_25177

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41666_PI390587928	Hv_44K_v2	AGGTTCGTCATATAATCGTATATATATGCTCCACCGATCATTCGTTCTCCCTTCAAAAAA	606	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.313	0.824	1.478	1.924	0.907	0.945
Raw	46.833	203.533	308.818	634.909	102.539	118.021

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_25177	677	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_25177 677 Hv_44K_v2
CACCACCACCACAGGGAGGCAACAGTCGTGCACTGGATGCACCACTGCCTGTACGACGTG
ACGGGCTCGGACGTGGGCACGGTGCGGCTGCTCAAGAGCCTGCGGCCGAAGCTGATGACG
ATCGTGGAGCAGGACCTGGGGCACAGCGGCGACTTCCTCGGCCGGTTCGTGGAGGCGCTG
CACTACTACTCGGCGCTGTTCGACGCGCTGCGCGACAGCGCGGGCGCCGCCGAGGAGGAG
CGACACGAGGTGGAGCGGCAGCTCCTGGGCGCGGAGATACGGAACATCGTGGCCGTCGGA
GGCCCGAAGCGGACGGGCGAGGTTCGGGTGGAGCGGTGGGGTGACGAGCTGCGCCGCGCC
GGGTTCCGGCCCGTGTCCCTCGCCGGGAGCCCCGCCGCGCAGGCCAGGCTGCTGATCGGC
ATGTACCCGTGGAAGGGATACACGCTGGCGGAGGAGGACGGGTGCCTCAAGCTCGGGTGG
AAGGACCTCTCCCTGCTCACAGCATCGTCGTGGGAGCCGACGGAAGACTGCTACGTCGCC
GTTGCAGAGCAAAAACGCCATGATTCTTGATCAATTTTGCTATATTTGGCCAGTGATGAT
TATCAAAGGTTCGTCATATAATCGTATATATATGCTCCACCGATCATTCGTTCTCCCTTC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_25177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38030.1	458	8e-115	protein\|GRAS family transcription factor domain containing protein, expressed
Brachypodium v1_2	Bradi1g24310.1	466	1e-105
Arabidopsis v10	AT3G54220.1	653	3e-70	\| Symbols: SCR, SGR1 \| GRAS family transcription factor \| chr3:20070550-20072625 FORWARD LENGTH=653