- Probe CUST_41663_PI390587928
- Source Contig U35_37151
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41663_PI390587928 | Hv_44K_v2 | GAGGCAAGGTTTTTCACTCATATAAGCCATATGAAGAGTGATAAATTTAGTCTTGCTTCG | 366 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.302 | 0.313 | 0.891 | 1.876 | 1.379 | 2.580 |
| Raw | 1167.815 | 1972.742 | 4709.637 | 13888.737 | 4094.053 | 8328.373 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_2581.1 | 667 | 2e-24 | 114 - 173 | 100 | 60 / 60 | minus | ABC32816 |
| MLOC | MLOC_2582.1 | 450 | 3e-22 | 1 - 56 | 100 | 56 / 56 | minus | ABC32816 |
| JLOC1 | JLOC1_1537.1 | 551 | 8e-25 | 422 - 481 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32816 | 491 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus | ABC32816 |
| Harvest35 | U35_37151 | 491 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus |
Contig Sequence (491 bp)
>U35_37151 491 Hv_44K_v2 GACTTGTTCCTTCAGCACAAACAAACGGTTCAAATGAGAACTACACATGTGTTGCTTTTG TCCCTCGTATTACTCGTGCTAGCATCAGATGTGGTAGTGGAGGCATCAAGAGATCCTAGC ATTAATGAATTCGTATGCGTGGAGAAAATTTTCCCGTCTCCAACATGTAATACCCATGCT TGTGAAGAGGCATGCTTCAAACGTACAAGGCAATTCAAATCTGGTGAATGTGTTGCTAAG GGGTGCAAGTGCAAGATGTGCATATACCAGCCTCCAGCCATCCATAATAATGAACAAATG GGTTCTAATTAGCTGAGATAGGATTCTGTTTTTAGCGAATAATGTGACCGAATCACAAAT GGTGTAGAGGCAAGGTTTTTCACTCATATAAGCCATATGAAGAGTGATAAATTTAGTCTT GCTTCGTGAAAATTATATGGAATTAAGTAGTGGTCTATAATATTTGAATAAGTGGTCTAA NAAAAAAAAAA
Homology of Contig U35_37151 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |