- Probe CUST_41656_PI390587928
- Source Contig U35_49131
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41656_PI390587928 | Hv_44K_v2 | CAGTGTACAAGTTCTTTTTAGCAGCTTCATGTGTACAACAACTATAGTGTGTATGTACAT | 51 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.031 | 0.627 | 1.530 | 1.090 | 0.996 | 1.200 |
| Raw | 3.241 | 183.333 | 352.783 | 369.471 | 122.102 | 166.775 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375974 | 1446 | 2e-24 | 1315 - 1374 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_70438.1 | 1351 | 2e-24 | 10 - 69 | 100 | 60 / 60 | minus | None |
| Harvest35 | U35_49131 | 463 | 3e-25 | 52 - 111 | 100 | 60 / 60 | minus |
Contig Sequence (463 bp)
>U35_49131 463 Hv_44K_v2 TTTTTTTTTTTTTTTTTACACTTACCAATAGAATACTGTATATATTGATATATGTACATA CACACTATAGTTGTTGTACACATGAAGCTGCTAAAAAGAACTTGTACACTGCACATGCAA CACATTTTATCTACATACATGAGCACCAACACAGAACATATGTCACAGCGACGGACACGT AGAGGCTTCACACTGTTCTGATCAAGCTACTGCACACACAGACACGCAGCTTCTATGGAG TTCGCATGAGCTTCACACTATTCTGATCAACTTACTGCACACACACACAGAGCTTCCATT GAGTTCTCATGAGCTTCTAGCTAGCAAGCCATCTGCTCCCTGCCGAAGGGTGTGATCTCC TTGAACACGGGCAGCCTCCGGTGACTCTTCCTGTACGGCGGCGCCCACTGCCTGGCCACC GCGTCCAGCAGCTCCGACATCTCGTCGGCCTCGGCGCCGTCCT
Homology of Contig U35_49131 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |