barSeed - Barley Seed Development Database

Probe CUST_41654_PI390587928

Source Contig U35_49133

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41654_PI390587928	Hv_44K_v2	ACTTGGCTATTTAGTGGATGGATGGCAATATATCATACTTACCTTGCTACATTATTCATC	65	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56149.1	2140	7e-23	1996 - 2055	98	59 / 60	plus	None
JLOC1	JLOC1_36293.1	2344	4e-23	2125 - 2184	98	59 / 60	plus
Harvest35	U35_49133	511	3e-25	66 - 125	100	60 / 60	minus

Contig Sequence (511 bp)

>U35_49133 511 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAGAATTCCGATTCCATAAGAATAGTAGTAGCATAAATGATAC
AAGTTGATGAATAATGTAGCAAGGTAAGTATGATATATTGCCATCCATCCACTAAATAGC
CAAGTACACACCTTTCTCTTTCCTTCTTAAAAGTAGCTCAGGACCAGCACTGGATAATGT
TCAGAAATAACACACCTGAGAACATGTTATATCAGGAACCTGCCTATTGTCAATCAAAAG
CTCGGTGGCGTACAGCACAGGCAAATTACTTGCTGTTTACGAGGCTGAGAGCAGTACGGT
TGCACAAATGCACATAGTGCCTTCTCTAGCAAACAAATCCTGCTTCACCTTCAAACATCA
GATTCACGAGGACCTCAGCCCAGGAACATTTATAAGGCCCATCTTCCGAAGAATGAGTTT
GGGTATGGCTGGCACAATTTCAAGCCCCATGCTCTGACTGAACTCCTCTGCAAGCTTGAC
AGTCTTGACTTGTCTCTGCTGATGGTCTGTT

Homology of Contig U35_49133 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None