barSeed - Barley Seed Development Database

Probe CUST_41648_PI390587928

Source Contig U35_49139

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41648_PI390587928	Hv_44K_v2	CACGAAGGCCTTTATAATGCTTTGAGTGCAGTAATATATTTTTGGAGGTGCTTTGATTAA	15	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.054	4.706	1.183	0.750	0.296	0.487
Raw	551.959	561.190	123.088	124.269	17.686	30.818

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6568.6	1389	2e-24	1274 - 1333	100	60 / 60	plus	None
JLOC1	JLOC1_4288.1	3516	8e-25	3380 - 3439	100	60 / 60	plus
Harvest35	U35_49139	482	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (482 bp)

>U35_49139 482 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCAAAGCACCTCCAAAAATATATTACTGCACTCAAAGCATT
ATAAAGGCCTTCGTGCACTCTACATCTCTCTTCCTTCCAAATTGGACCTGCATTGGTCTG
CGCTCGGCCAATCTTCGGACGGAGTTCCACAGTTCTACCAGCCTCGAGTATTTCAGCAAC
TACTTTTTTCAGAGCGAAACCAACGCTGAAGAAGCCATCGTGACGAACACCGGGCAACCT
AACCACCTTCAGAACCTGGCCTTCCACCCTAGACCACTCCTTCTCGATAGCCACCAGGCT
CACCATGTTTATGTCGCCATCGCCGTCGCCGTACACCACCTCCGGCGTTCCCACGAACCC
GTCCTCCCCGTACACGAACGTCTCCGGCGTGCTGACGCCGACGCCGATGATGCTGGTCAC
CGGCACCATCGGCGCCGGGAGGGCCTCCCATGCTGGCAGCACCCGCGTCTCGTACGGCCG
GA

Homology of Contig U35_49139 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g69250.1	423	3e-54
Arabidopsis v10	None