barSeed - Barley Seed Development Database

Probe CUST_41644_PI390587928

Source Contig U35_25183

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41644_PI390587928	Hv_44K_v2	GCCATTGATCAAATAACAACTTCTTTTGGAAAAGGAGCAATAATGTGGCTTGGCCGCTCT	291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5855.3	1517	7e-23	1120 - 1179	98	59 / 60	minus	ABC24996
MLOC	MLOC_5855.2	1683	7e-23	1365 - 1424	98	59 / 60	minus	ABC24996
MLOC	MLOC_5855.1	1815	7e-23	1391 - 1450	98	59 / 60	minus	ABC24996
JLOC1	JLOC1_3792.1	2030	4e-23	379 - 438	98	59 / 60	plus
Harvest21	ABC22067	351	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_25183	351	3e-25	292 - 351	100	60 / 60	plus

Contig Sequence (351 bp)

>U35_25183 351 Hv_44K_v2
ACCCTAAACCCTAGCCCCCCTCCCTCCCCAAATCCTCCCCTCGCGGCTGCAGGGGACGGA
GAACCACCGAGCGCGCCGACGGCAGCCATGGCGACCCTCCTGAGGCGCGCGTCGCTGCGG
CGGGCCATCGCCTCCGCCGCCGCCTCCTGCCCCGAGAGCTATAGGCAGGTGATCTGTGGT
TCTTCCTTTCATTGCCGAGATTTCGCATCTAAAGCCAAAAAGAAGTCAAAGTCAAGTGGA
ACCGACTCCGGTGAGGAGAACATGTCAAAGAAAGACTTGGCTTTACATCAGGCCATTGAT
CAAATAACAACTTCTTTTGGAAAAGGAGCAATAATGTGGCTTGGCCGCTCT

Homology of Contig U35_25183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None