- Probe CUST_41636_PI390587928
- Source Contig U35_37164
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_41636_PI390587928 | Hv_44K_v2 | GGTCTAGGAAAAGTTAGCTTGCTCAAGTGATGGAGGACATAATATTGTATAACTTTTTGA | 261 | GeneList: lightcyan1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.181 | 0.203 | 0.942 | 1.915 | 1.457 | 2.033 |
Raw | 2990.083 | 5043.037 | 21486.933 | 60109.367 | 18683.310 | 28403.700 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
JLOC1 | JLOC1_18486.1 | 783 | 8e-25 | 614 - 673 | 100 | 60 / 60 | plus | |
Harvest21 | ABC32845 | 466 | 3e-25 | 262 - 321 | 100 | 60 / 60 | plus | ABC32845 |
Harvest21 | ABC03692 | 671 | 1e-23 | 470 - 529 | 98 | 59 / 60 | plus | ABC03692 |
Harvest35 | U35_37164 | 466 | 3e-25 | 262 - 321 | 100 | 60 / 60 | plus | |
Harvest35 | U35_15648 | 671 | 1e-23 | 470 - 529 | 98 | 59 / 60 | plus |
Contig Sequence (466 bp)
>U35_37164 466 Hv_44K_v2 GGTTGAATTGTTCCTTGAGGGGAAGAAGTTTGACATTGTTTAGTTAGATAAGGACATGCC CATCATGACTGGTCCCGAGGCAGTTGTTAAGATCCATGCTATGGGGGAAGGTGATGTGAA GATTGTTGGGGTTTCTGCCGATGATCATGCAATGGAGGCATTCATGAATGTTGGTGCTGA TGCTTTCGTGCCCAAACCAATGAGGAGGGAGGTTCTCATTCCTATCATTCAGGACATCAT CAACAAGAACAATAATGCCATGGTCTAGGAAAAGTTAGCTTGCTCAAGTGATGGAGGACA TAATATTGTATAACTTTTTGATCTATGTTTGCTTTACTGCATTGTTGTGTTGCTTGTTCA ATTGTGTCATTTGATTGTGAGAACTTCATGTTAATGTCCAAACATAATTATCCATAATAA TAAAGTACTTCTGATTATATTTGATCGATAAAAAAAAAAAAAAAAA
Homology of Contig U35_37164 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |