barSeed - Barley Seed Development Database

Probe CUST_41635_PI390587928

Source Contig U35_37165

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41635_PI390587928	Hv_44K_v2	CCTCTTTTTGTAATCCAAGCACTTCATAAGCTGTACATATAACAATGGCATACAGTTCAA	443	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.472	0.517	0.603	2.751	2.004	1.816
Raw	15.804	24.617	26.553	188.854	49.506	48.063

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7007.1	374	6e-24	10 - 68	100	59 / 59	minus	ABC32846
JLOC1	JLOC1_4614.1	1981	3e-24	1841 - 1899	100	59 / 59	plus
Harvest21	ABC32846	518	3e-25	444 - 503	100	60 / 60	plus	ABC32846
Harvest35	U35_37165	518	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_35185	311	5e-23	163 - 221	98	58 / 59	plus

Contig Sequence (518 bp)

>U35_37165 518 Hv_44K_v2
TTGAAGGCGGCACGAGGACCAACCGTACCCGATGGGCAGGATGAAGTTCCTGTGGGGCGA
CGACGCCGAGGAGTTCAGGCCGGAGAGGTGGCTCGACGGCGACGGCGTGTTCGTCCCGGA
GAGCCCCTACAAGTTCACGGCCTTCCAGGCGGGGCCTCGGATCTGCTTGGGGAAGGAGTT
TGCGTATANGCAGATGAAGATATTTGCGGCAGTTCTTCTCTACCTCTTCAGGTTTGAGAT
GTGGGAGGGCAANTNNACGGTGGGGTATNGCCCCATGCTCACGCTCAAAATGGATGGCCC
GCTCAACGTTCGTGCGTCGCCCCGGCGAGCAAGCGGGTAGCGTGCTTGCTATCAAGATGT
CCAATCTCGAAAGTTTGTGCATGTTTCGGTGTTCCATTCTGTTTGAACTTCGATAATATG
ATGATGTGCATATAACAATGCGGCCTCTTTTTGTAATCCAAGCACTTCATAAGCTGTACA
TATAACAATGGCATACAGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_37165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48460.1	507	4e-51	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi5g18920.1	512	1e-57
Arabidopsis v10	None