barSeed - Barley Seed Development Database

Probe CUST_41634_PI390587928

Source Contig U35_37167

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41634_PI390587928	Hv_44K_v2	GAAGATCAAGTATGCAGATCCACTTGTGTATACTGGACCGATCAGAGTTAGAACAGGAAA	434	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357447	1629	2e-24	1064 - 1123	100	60 / 60	plus	ABC40023
MLOC	MLOC_76955.4	2091	2e-24	521 - 580	100	60 / 60	plus	ABC40023
MLOC	MLOC_76955.8	2082	2e-24	496 - 555	100	60 / 60	plus	ABC40023
MLOC	MLOC_76955.7	2253	2e-24	505 - 564	100	60 / 60	plus	ABC40023
MLOC	MLOC_76955.3	1206	2e-24	525 - 584	100	60 / 60	plus	ABC40023
MLOC	MLOC_76955.6	1305	2e-24	947 - 1006	100	60 / 60	plus	ABC40023
MLOC	MLOC_76955.5	1302	2e-24	940 - 999	100	60 / 60	plus	ABC40023
MLOC	MLOC_76955.2	2049	2e-24	463 - 522	100	60 / 60	plus	ABC40023
MLOC	MLOC_76955.1	2338	2e-24	582 - 641	100	60 / 60	plus	ABC40023
JLOC1	JLOC1_51321.7	2020	8e-25	442 - 501	100	60 / 60	plus
JLOC1	JLOC1_51321.6	2198	8e-25	442 - 501	100	60 / 60	plus
JLOC1	JLOC1_51321.5	3222	8e-25	450 - 509	100	60 / 60	plus
JLOC1	JLOC1_51321.4	2036	8e-25	453 - 512	100	60 / 60	plus
JLOC1	JLOC1_51321.3	2219	8e-25	463 - 522	100	60 / 60	plus
JLOC1	JLOC1_51321.2	3235	8e-25	463 - 522	100	60 / 60	plus
JLOC1	JLOC1_51321.1	2041	8e-25	463 - 522	100	60 / 60	plus
Harvest21	ABC32849	497	3e-25	435 - 494	100	60 / 60	plus
Harvest35	U35_37167	497	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_37167 497 Hv_44K_v2
GGTCTAAATGAGCATAGTGGAAGATACGACCATTTTGCAAAGTTGTTGAATGACCAAGGT
CTTAAAGTTTATGCGATGGACTGGATAGGACATGGCGGAAGTGATGGCGCGCATGGTTAT
GTTTCATCGCTTGATCATGCTGTTGGTGATTNGAAAGAATTTTTAGAGGATGTTGTGTTA
GAAGAAAACTATGGTTTGCCATGCTTCTTATTTGGCCACTCCACAGGTGGAGCTATTGTT
TTGAAGGCAGCACTAGATCCTTGTGTGGAAGTTCATATTGAAGGTTTGATCTTGACCTCG
CCAGCTATTCACGTTCAGCCATCTCATCCGATTATCAAAGTTGTTGCACCAATCTTCTCG
GTGTTGGCTCCGAAATATCGGGTTAGTGCTTTGCATAGGAGAGGACCTCCTGTTTCCCGT
GATCCAGAGGCTTTGAAGATCAAGTATGCAGATCCACTTGTGTATACTGGACCGATCAGA
GTTAGAACAGGAAACGA

Homology of Contig U35_37167 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g23150.1	398	1e-112	protein\|monoglyceride lipase, putative, expressed
Brachypodium v1_2	Bradi4g29670.1	388	3e-114
Arabidopsis v10	AT5G11650.1	390	5e-74	alpha/beta-Hydrolases superfamily protein \| chr5:3745069-3746816 FORWARD LENGTH=390