barSeed - Barley Seed Development Database

Probe CUST_41621_PI390587928

Source Contig U35_25192

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41621_PI390587928	Hv_44K_v2	TTACTCAATACTACACTGTAAAATGTCAACACGGCACAATACAAAGAGATGGTGTGTAAA	678	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17206.1	2737	2e-24	2642 - 2701	100	60 / 60	plus	ABC21425
MLOC	MLOC_17206.2	2457	2e-24	2362 - 2421	100	60 / 60	plus	ABC21425
JLOC1	JLOC1_11883.3	2572	8e-25	2312 - 2371	100	60 / 60	plus
JLOC1	JLOC1_11883.2	2852	8e-25	2592 - 2651	100	60 / 60	plus
JLOC1	JLOC1_11883.1	2592	8e-25	2332 - 2391	100	60 / 60	plus
Harvest21	ABC21425	752	3e-25	679 - 738	100	60 / 60	plus	ABC21425
Harvest35	U35_25192	752	3e-25	679 - 738	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_25192 752 Hv_44K_v2
GTTGGAATGTATAGAAGTCTATCTGACCCAAAACACCATCGTAGTCTCTTTGGCTTTGAT
CGGAATCCTACCATAACCCCTTATAATTTAGGTATTGGTGGATGAATGCAGATGTTTGAA
CATCCATGCCTGGAGGGTGATGAAGAAAGAAAAAGACGGTTTGGTGCTCGGAGATTGGAA
CCTTCATGGAAGTTGCTTGGATTCACAAGCTGTCACAAGTGGCAATTGAAAGAGTTCCAG
TTCGGTGGTTTTAGGCCCCTACTGGAGCATCACTTTCTATTTGTAAGTACCGTGATGAGT
CGAGCTCCAGACTTGAAGACGGTTCTTCTGACAGACGGTAAATATCCATGCAAGGGTTGT
GACACAAGGATCCCAATACCTCCTCCGATAGGGGGCTTCTTCCCAACATACAGGGATGGG
CAAGAAGCAATAGCCAAGCAACTTAGAGAGAGGGTCCGGTCCTCGGCACAGATAATTTTC
CGTAGTGGTTCGACTTACCCCTTGCGGGCAACCCGGTCATGTATTTATTAGCTAGGAGCG
TGCGAGAGATCTACCGTGCACGGAACCTCCCGTGCCTGCATCGACCGATCGCTAATGCAT
CATGATCCGAGCACTGCCTGCATCGACCGATCGCTAATGCATCATGATCCGAGCACCGCT
GAATCTTTTTTGCTTTGTTTACTCAATACTACACTGTAAAATGTCAACACGGCACAATAC
AAAGAGATGGTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25192 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None