barSeed - Barley Seed Development Database

Probe CUST_41620_PI390587928

Source Contig U35_25193

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41620_PI390587928	Hv_44K_v2	CTCACTAGTAAGGTAGAATCAGTTAAGGATGTTGTTCAGCCCAAAGGTGCTAGCAAAAAA	138	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.757	2.226	1.073	0.900	0.538	0.524
Raw	1525.457	2708.780	1266.917	1597.091	351.608	371.976

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76215.1	5879	2e-24	816 - 875	100	60 / 60	minus	ABC22487
MLOC	MLOC_76215.2	6154	2e-24	816 - 875	100	60 / 60	minus	ABC22487
Harvest21	ABC22487	209	3e-25	139 - 198	100	60 / 60	plus	ABC22487
Harvest35	U35_25193	209	3e-25	139 - 198	100	60 / 60	plus

Contig Sequence (209 bp)

>U35_25193 209 Hv_44K_v2
GCACGAGGATTCAACACTCTTCAGGAATCATCCGCAGTTAAGGCAGCTAGATTTATAGAT
CAACTTAATTCAACTGTACGAGAACAAGCAAGGTTTCTACAATACAAAGCACCAGGTAGT
GGTAAGGTGGAAGCAGTACTCACTAGTAAGGTAGAATCAGTTAAGGATGTTGTTCAGCCC
AAAGGTGCTAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_25193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None