- Probe CUST_41609_PI390587928
- Source Contig U35_49150
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41609_PI390587928 | Hv_44K_v2 | GTGGAGATTATTTGAGCCATTCTTGTAATAATATTAGACTGGATGGGTGGTTAGTTGAAA | 14 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 10.794 | 6.354 | 1.747 | 0.632 | 0.568 | 0.506 |
| Raw | 126.846 | 122.803 | 29.045 | 16.449 | 3.433 | 3.286 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354967 | 824 | 2e-23 | 749 - 806 | 100 | 58 / 58 | plus | None |
| MLOC | MLOC_40752.1 | 644 | 9e-22 | 334 - 391 | 98 | 57 / 58 | plus | None |
| JLOC1 | JLOC1_26620.1 | 619 | 5e-22 | 358 - 415 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_49150 | 373 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (373 bp)
>U35_49150 373 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAACTAACCACCCATCCAGTCTAATATTATTACAAGAATGGCT CAAATAATCTCCACACACCAAAAATCACAAAAATACAGGGAAAAAAGGCTATATGATGTA GCACCGGAGAAACAATTTATCGACTAAGGATGAAATTTACAAGAGATGACCAAGAACATT GTGAAGAACAAAAGGTAATAATTATCTTCGGTTGGAGCGCATGCGAATCCGGCCCTGCCG ACCGACCAACTTTCCCTGCACGCCTGAGGCCTGGCGGATTGCTGCCGCTGTCCCTCATCC CCTGTCCTATCCGCTACGCCAACCACATGGCGACCACGAGCCCCACGGCCGGGAGCGCCG CCCAGGCCACTCC
Homology of Contig U35_49150 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |