- Probe CUST_41603_PI390587928
- Source Contig U35_49157
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41603_PI390587928 | Hv_44K_v2 | CTGCGCATTTTGGCATATGCGAATGAAATATAAGAAACAGTCGAATTTGAGGTTGAAAAA | 12 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.264 | 0.325 | 1.164 | 1.759 | 1.210 | 0.929 |
| Raw | 334.709 | 621.776 | 2013.250 | 4566.957 | 1146.357 | 965.206 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_80432.1 | 1968 | 7e-23 | 1583 - 1639 | 100 | 57 / 57 | plus | None |
| JLOC1 | JLOC1_53548.1 | 1637 | 5e-22 | 1583 - 1637 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_49157 | 386 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus |
Contig Sequence (386 bp)
>U35_49157 386 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAACCTCAAATTCGACTGTTTCTTATATTTCATTCGCATATGC CAAAATGCGCAGCTTACAAGGGAGACTTTAACTGCCACCAAACCATCCATTGATCGCTTT GCTGCCGGTTCCATTGATCGAAAATCACGGCATGCCACCGTCCACCAACGTCGCCGGGGG CCGCCACACGCTCACGAGCTTCAGCACGAACTCTACTCTATATGGAACTCCTTACCTCCC CGTCGATCTCACTGCTCAGGCACGCCTAGGAAGGACAAAAGGGGCCGTTGTGATTCACGG GTCGACCTCGCCGCCGGCAACGCCGGGGCAATCGTTCCGCCCTCGCAGGGTCCTCGCCGG GAAGCATCAGGCCGTCTGCCGCGTTG
Homology of Contig U35_49157 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |