- Probe CUST_41601_PI390587928
- Source Contig U35_49159
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41601_PI390587928 | Hv_44K_v2 | GTACAATGTGCAACAGCAGTGACAATTTTGTCGCGGGGAACATTTGATTTCCCGAAAAAA | 11 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.860 | 1.661 | 2.054 | 1.303 | 0.328 | 0.179 |
| Raw | 54.697 | 175.365 | 181.976 | 179.601 | 17.562 | 9.784 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_49159 | 395 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (395 bp)
>U35_49159 395 Hv_44K_v2 TTTTTTTTTTTTTTTTTCGGGAAATCAAATGTTCCCCGCGACAAAATTGTCACTGCTGTT GCACATTGTACGAGGTAAACAAGGAAAAGCTTGACGTGTATGGTGCACTCAAGCGAAGGC ATGTGCTGGTGGCTGGCAGTTAAAGCCACGCACGCACGCACGCAGTTAAAACGCAGCACA CTGGCAGTGCATGAGCATGATCATGCATCGCCACCGCCGTCAAGCACACGAGGCCGGATG TCCTTGAGCACGCCCACCACCTGCTGCATCGTCGGCCGTTTGTCCGGCGAGTGCGCCGTG CACAGGTACCCCACCCGAAGGCACTCCACCATCCCCCGTTCCGCCACCTGGCCGGCGTGC ACCCGGGGGTCCACGATGTCCAGCCCCTTGCCGTC
Homology of Contig U35_49159 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |