barSeed - Barley Seed Development Database

Probe CUST_41599_PI390587928

Source Contig U35_37181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41599_PI390587928	Hv_44K_v2	GACTACGAGTACAATAATGTTTGGACAAAGAGCAATGAAGGTTCAGAACATGGTGAAATT	492	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.175	1.102	1.219	0.771	0.477	0.355
Raw	168.333	223.198	238.049	210.694	50.314	41.641

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55033.1	3265	2e-24	1232 - 1291	100	60 / 60	plus	ABC09078
JLOC1	JLOC1_35467.1	3411	8e-25	1232 - 1291	100	60 / 60	plus
Harvest21	ABC32870	631	3e-25	493 - 552	100	60 / 60	plus
Harvest35	U35_37181	631	3e-25	493 - 552	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_37181 631 Hv_44K_v2
GGTTGAAGTTAGAGACCAGAAGAGTTTTATGGACCTTTTAAGGATTGGTGAAGCTCATCG
TGTTGCTGCAAACACAAAGTTAAATACAGAGTCATCTCGTAGTCATGCAATTCTCATGGT
AAATGTCAGAAGGGCTGTAAAAGGTAGAAGTGAAATGAATGTTAGTATGTCTGCTGAAAA
TGGGCATTCATCTTCAATGATGGACTCTCTACGACCACCTATTGTCAGGAAAAGCAAGCT
TGTAGTTGTAGACCTGGCAGGATCGGAGCGAATAGACAAATCTGGAAGCGAGGGTCATAC
ATTAGAAGAGGCGAAGTCTATTAACTTGTCCCTAAGTTCACTAGGAAAATGCATCAATGC
ACTTGCTGAAAGTAGCGCACATGTTCCTGTTCGTGATTCCAAGCTTACTAGGTTGCTTAA
AGATTCATTTGGAGGCACTGCAAGAACATCATTGGTTGTGACGATTGGTCCGTCTCCAAG
ACATAGGGGGGAGACTACGAGTACAATAATGTTTGGACAAAGAGCAATGAAGGTTCAGAA
CATGGTGAAATTAAAGGAAGAATTTGACTACAAAAGTTTGTGTAGGAGACTTGATATTGA
ATTGGACAAGTTAATCGCAGAAAATGAAAGG

Homology of Contig U35_37181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04560.2	764	1e-127	protein\|kinesin motor domain containing protein, expressed
Brachypodium v1_2	Bradi1g51507.1	811	7e-132
Arabidopsis v10	AT1G12430.2	920	5e-106	\| Symbols: ARK3 \| armadillo repeat kinesin 3 \| chr1:4234122-4238552 REVERSE LENGTH=920