- Probe CUST_41596_PI390587928
- Source Contig U35_37185
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41596_PI390587928 | Hv_44K_v2 | GGTTGTCTCCCAGGCGTGATGAGAAAGAAAGGTGGGGGTGGGAGGAGAATGCTCCGCTGT | 192 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.080 | 1.132 | 1.131 | 0.812 | 0.546 | 0.570 |
| Raw | 326.979 | 491.231 | 463.913 | 497.201 | 120.774 | 140.533 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC32879 | 304 | 3e-25 | 193 - 252 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37185 | 304 | 3e-25 | 193 - 252 | 100 | 60 / 60 | plus |
Contig Sequence (304 bp)
>U35_37185 304 Hv_44K_v2 GAGGCATAAAACGAGCACATACTATNAAGCATGAACCCATANACCGANCACATACTTNTG ACGAACGCTTCCGAGGGCAAAGCTNNCCACCACCTCCACCTCTTCCAACTAGTTNNNGAC CCCAATCAGTCGCTGCTAACCGAAGAGATGAAGACATNGACCGGAGGGGGGGCAGCACCA GGCATACACAGCGGTTGTCTCCCAGGCGTGATGAGAAAGAAAGGTGGGGGTGGGAGGAGA ATGCTCCGCTGTNGCAGGATGATGGGAAGCACAGGAGAGAGGAAGATCTGCGGGATAGAA AGCG
Homology of Contig U35_37185 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |