barSeed - Barley Seed Development Database

Probe CUST_41593_PI390587928

Source Contig U35_37189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41593_PI390587928	Hv_44K_v2	GGTACTTTTCTGAAGAAATGATTGAGTCCCAGGTAGATCAGCTTGTTTTAGAGGAGCTAG	534	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67639.2	2703	2e-24	1637 - 1696	100	60 / 60	minus	ABC16308
MLOC	MLOC_67639.1	2891	2e-24	1675 - 1734	100	60 / 60	minus	ABC16308
JLOC1	JLOC1_44678.1	2702	8e-25	976 - 1035	100	60 / 60	plus
Harvest21	ABC32888	597	3e-25	535 - 594	100	60 / 60	plus
Harvest35	U35_37189	597	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_37189 597 Hv_44K_v2
GTGCAGATAAGGTTGACCCTAGCCAAGAAGTGCAATCAGGCGATGTGAATGCTGAAACTG
GCAACACGAGTCAAGAAGAAACTTATTCTTTGAAGGAAGAGTTGGAGTGTCTTGTCCATG
GTGGACTGCCGATGGCTTTTAGAGGAGAGCTGTGGCAAGCTTTTGTTGGTGTTGGAGCTC
GAAGAGTAGAAGGGTATTATGGTAGTTTGCTTGCTTCTGAAGGTGAATTAGAAGATGGTG
ATTCTTTGGCCTCAGGAGGAGTTGATGAAAGACCTGAAGTATTGTCAGCATTTTCCTCTG
AAAAGTGTAAAGGGCAAATAGAGAAGGACTTGCCCAGAACTTTTCCAGGTCATCCTGCTT
TAGATGATGATGGAAGAAATGCCTTGAGACGCTTGCTTCTGGCTTATGCTAGACACAATC
CAACAGTTGGTTACTGTCAGGCAATGAACTTCTTTGCTGGTCTCTTACTCCTATTGATGC
CAGAAGAGAACGCATTTTGGACATTGGCAGGAATTATTGATGACTACTTTGATGGGTACT
TTTCTGAAGAAATGATTGAGTCCCAGGTAGATCAGCTTGTTTTAGAGGAGCTAGTCT

Homology of Contig U35_37189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38950.1	831	1e-79	protein\|TBC domain containing protein, expressed
Brachypodium v1_2	Bradi2g22850.1	828	6e-96
Arabidopsis v10	AT3G55020.1	777	3e-61	Ypt/Rab-GAP domain of gyp1p superfamily protein \| chr3:20389278-20394713 REVERSE LENGTH=777