barSeed - Barley Seed Development Database

Probe CUST_4158_PI390587928

Source Contig U35_2424

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4158_PI390587928	Hv_44K_v2	CTGCAGCACTGCCTGTTAAATTAATCTGGAACTAAGGATAAAGATGAATTGAATTTCAGC	1674	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.630	2.214	1.122	0.795	0.255	0.362
Raw	173.276	228.608	103.251	124.381	12.714	20.348

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36826.1	5028	2e-24	4729 - 4788	100	60 / 60	plus	ABC06674 ABC30143
MLOC	MLOC_36826.4	3744	2e-24	3391 - 3450	100	60 / 60	plus	ABC06674 ABC30143
MLOC	MLOC_36826.2	1974	2e-24	1817 - 1876	100	60 / 60	plus	ABC06674 ABC30143
MLOC	AK370949	1754	7e-23	1698 - 1754	100	57 / 57	plus	ABC06674 ABC30143
JLOC1	JLOC1_23762.1	1646	8e-25	1351 - 1410	100	60 / 60	plus
Harvest21	ABC30143	212	3e-25	121 - 180	100	60 / 60	plus	ABC30143
Harvest21	ABC06674	1752	3e-25	1675 - 1734	100	60 / 60	plus	ABC06674
Harvest35	U35_2424	1756	3e-25	1675 - 1734	100	60 / 60	plus

Contig Sequence (1756 bp)

>U35_2424 1756 Hv_44K_v2
TCGCCGGCCGCGCGAGACCCCACAGCCTGCACAGCTGCACTCACTCAGGCGCCGCCGCCC
GCCGACACCGCCATGTCGGGCGCCGTCGGGCCCCTGCTCCTGCTGCTCCTCGTCCTCGTC
GCGGCGGGGGCGGCGGAGGGGTCGTGGCGGGCGGAGCANGAGCGGGACCGGGTGCCGCGG
GTGCCGGGGCAGGCCTTCGACGCCAGCTTCGCGCACTACGCCGGCTACGTCACCGTCAGC
GAGGACCGCGGCGCCGCGCTCTTCTACTGGTTCTTCGAGGCCGCGCACGACCCGGCCTCC
AAGCCGCTCCTGCTCTGGCTCAACGGAGGGCCTGGTTGCTCATCGATTGCTTTTGGAGTC
GGGGAAGAAGTGGGGCCTTTCCATGTCAATGCAGACGGAAAGGGCGTTCATATGAATCCT
TACTCTTGGAACCAAGTTGCAAATATCTTGTTCCTTGATTCACCGGTTGGTGTTGGTTAT
TCATATTCAAACACCTCTGCTGATATTTTAAGCAATGGGGATGAGAGGACTGCCAAGGAT
TCGTTGGTGTTCCTAACAAAGTGGCTTGAACGATTCCCTCAATACAAGGAGCGTGAATTT
TATTTAACTGGAGAGAGCTATGCTGGACACTACGTTCCTCAGTTGGCTCAAGCCATAAAG
AGGCATCATGAGGCCACTGGAGACAAATCAATCAATCTAAAGGGTTATATGGTAGGAAAT
GCCCTGACTGACGATTTCCATGACCACTATGGAATATTTCAATATATGTGGACCACTGGC
TTGATTTCTGATCAAACATACAAGCTACTGAACATTTTCTGTGACTTCGAGTCCTTTGTG
CATACATCTCCACAGTGTGATAAGATTCTTGACATTGCTAGCACTGAAGCTGGGAACATT
GATTCGTATAGCATCTTCACACCTACTTGTCATTCATCTTTTGCCTCCTCAAGGAACAAA
GTGGTGAAAAGGCTTCGGTCTGTTGGAAAAATGGGGGAGCAATACGATCCATGTACCGAA
CAACATTCAATTGTATATTTCAATCTGCATGAGGTGCAGAAGGCACTTCACGTCAATCCG
GTCATTGGCAAATCCAAATGGGAGACCTGCAGTGAAGTTATTAACACCAACTGGAAGGAC
TGTGAAAGATCTGTATTGCATATCTATCATGAACTTATTCAGTATGGGCTTCGTATATGG
ATGTTCAGTGGAGACACAGATGCAGTGATTCCAGTAACATCAACTAGATACAGCATTGAT
GCTCTCAAGCTTCCAACAGTGACCCCGTGGCATGCTTGGTATGATGATGATGGCGAGGTT
GGTGGTTGGACCCAAGGGTACAAGGGTCTCAACTTTGTGACAGTAAGGGGTGCGGGTCAT
GAGGTTCCTCTCCATCGTCCCAAGCAGGCTCTTACGCTCATCAAATCATTCTTGGCCGGG
AGCCCAATGCCTGTGCTGTCTGATCTACGCAGCGATATGTAATATGCCGGACACATTTGG
TTTCGGACACGACCAGCACCACAAGATTCCAGCTCACCAAGGCAGTTCGGTTGTTAAAAC
TCCACACGTACTTCCACAATATAAGGATGGCCATAGCTGTTGCCATTTGTAAGTGCTATT
GGCACCAATTAATCCCCTGAGACAGGGAAACAGTTTTCCTGCCGCTAATTGACACTGCAG
CACTGCCTGTTAAATTAATCTGGAACTAAGGATAAAGATGAATTGAATTTCAGCAAAAAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_2424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g08720.1	485	protein\|OsSCP32 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi1g47090.1	475
Arabidopsis v10	AT4G30810.1	479	\| Symbols: scpl29 \| serine carboxypeptidase-like 29 \| chr4:15003474-15006017 FORWARD LENGTH=479