barSeed - Barley Seed Development Database

Probe CUST_41588_PI390587928

Source Contig U35_49164

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41588_PI390587928	Hv_44K_v2	CTTCATATCAACTCTGCTGTGTATTTCCCGCTGGAGCAAAAATTTCAGATTTTGTAAAAA	12	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.975	3.260	1.282	0.547	0.167	0.196
Raw	1669.122	2092.725	721.602	500.524	52.990	66.903

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62343.1	1460	3e-22	1348 - 1403	100	56 / 56	plus	None
JLOC1	JLOC1_40799.1	1532	1e-22	1385 - 1440	100	56 / 56	plus
Harvest35	U35_49164	332	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (332 bp)

>U35_49164 332 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAAAATCTGAAATTTTTGCTCCAGCGGGAAATACACAGCAGA
GTTGATATGAAGCAACAAGTTGGTACAAGTGCCGGTTCCCTGAACACACAAGCAAAATGC
CTTGGAGCTAACAGTTCAGTAGTTCAGGGAGACAGGGGCCCATCGCCCCGGAGTAAAACA
TCATCTAAAACAGCTATCTGGGGGGCAAAAATTTAACCTAGAGGCAGAGGTTTCTTCTAC
AAATTTTTTTTGGGCGCCTTCCTTTTCATCCGGCTGAAAGGGCCAACCGTCTGGTCCATG
ACGTACATGTATATCACCTGGCTCCAGGACCT

Homology of Contig U35_49164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None