- Probe CUST_41586_PI390587928
- Source Contig U35_49166
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41586_PI390587928 | Hv_44K_v2 | GACTACATTGTCTTCTACAACCTCCTCGGCATGAACTAGGCGTAGTCTTTTTAGTTTTTT | 71 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.532 | 1.192 | 1.051 | 0.830 | 0.427 | 0.394 |
| Raw | 898.490 | 1027.371 | 862.915 | 1036.287 | 191.159 | 194.281 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76702.1 | 1272 | 2e-24 | 1121 - 1180 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_51152.1 | 890 | 8e-25 | 780 - 839 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49166 | 377 | 3e-25 | 72 - 131 | 100 | 60 / 60 | minus |
Contig Sequence (377 bp)
>U35_49166 377 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGACCAAAAATAGGAGGTTTCATTGATATTTGAGTGAATTAAA AAACAGAGATAAAAAAACTAAAAAGACTACGCCTAGTTCATGCCGAGGAGGTTGTAGAAG ACAATGTAGTCGTTGCCACCATCGTCGCCGTCACTGTCGCTCGGCGGTCCGTCCTTCGGG GCGTCCTTGTTGCAGCCATGCCCTCGATCACCGGTGGGGACGGGCTTGCTCGGTGCGGCG ACCTCCTCGTCGTTGTCGAAGAGCACGATGACGCTGCCCTCGTCGCAGCTGCCGTGCCGC TCGGCAATCTCTTCCAGAGCACGGCATTGGCGCTCCATCTCCTACTTGACGTAGTCAGCG CGCGACCAGACGAGGCC
Homology of Contig U35_49166 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |