barSeed - Barley Seed Development Database

Probe CUST_41585_PI390587928

Source Contig U35_49167

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41585_PI390587928	Hv_44K_v2	GCATCCGGCTGTATAGTTTACAACAAGTATAGTTTACAACGTCACATTGTTGCCAAAAAA	11	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.135	1.910	2.003	1.176	0.300	0.274
Raw	159.472	424.937	390.633	354.862	31.440	32.614

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5685.2	1549	3e-21	1419 - 1472	100	54 / 54	plus	None
MLOC	MLOC_5685.1	2021	3e-21	1891 - 1944	100	54 / 54	plus	None
JLOC1	JLOC1_3673.1	1833	2e-21	1506 - 1559	100	54 / 54	plus
Harvest35	U35_49167	412	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (412 bp)

>U35_49167 412 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGCAACAATGTGACGTTGTAAACTATACTTGTTGTAAACTATA
CAGCCGGATGCAAAATAATCGAGGGGGCATTACAACATCACTGACAAGTTTAGTTACCTA
CTAGTAATACATAGCAAGCAGGACAGGTCGATGGGCAGATTTATGACACAGGAAACTCTC
ACCCTATCATCATAAACACATGGCAAAACGAAGAAGTTTCATAGAACATAGACCATGCCG
ACCTCCAGGAGCGATGCCGGCGGCACCCGCAGCGCAACGTCCGGGCCACGGCAGTTGCGC
CGCAGGAAGTTGTACCCGACCACCGTCAGCTTCTTCAGCACCGACGAACCAGGCTTGGAC
TGCACGTGTGAGTGCCCCAAGATGAAGGCGGTGCCGGCCTCCCTCGCCGCCG

Homology of Contig U35_49167 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None