- Probe CUST_41580_PI390587928
- Source Contig U35_37192
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41580_PI390587928 | Hv_44K_v2 | TGGTGTTCATCTTTCATCAGAGAGTTCAATGCAATGTTTCGTTGTGTGTCTCACAAAAAA | 166 | GeneList: plum1 MasterList: Sucrose_synthase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.133 | 0.141 | 0.759 | 1.165 | 1.398 | 1.623 |
| Raw | 10443.167 | 16414.283 | 83073.267 | 180387.500 | 81336.333 | 104252.133 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC00460 | 2849 | 1e-23 | 2671 - 2730 | 98 | 59 / 60 | plus | ABC00460 |
| Harvest21 | ABC00554 | 788 | 2e-21 | 651 - 703 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_37192 | 237 | 3e-25 | 167 - 226 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14484 | 1740 | 1e-23 | 1544 - 1603 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14482 | 631 | 2e-21 | 494 - 546 | 100 | 53 / 53 | plus |
Contig Sequence (237 bp)
>U35_37192 237 Hv_44K_v2 GGGATGTTGCAAACGAACTCATGAGGGAAATGCAGACCAAGCCTGATTTGATCATTGGCA ACTACAGTGATGGTAACCTTGTGGCCACTCTGCTTGCCCATAAATTGGGTGTTACCCAGT GCTGCTTGCTGGTTCATGCCAGCCGCCTCGAATAAACGCCTGCCCGTGGTGTTCATCTTT CATCAGAGAGTTCAATGCAATGTTTCGTTGTGTGTCTCACAAAAAAAAAAAAAAAAA
Homology of Contig U35_37192 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |