barSeed - Barley Seed Development Database

Probe CUST_4157_PI390587928

Source Contig U35_2425

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4157_PI390587928	Hv_44K_v2	ACGTAACATTGGATAGTTCAAACTTATAAGCATGCAACATTAGAATCGGAAGCAGCAATA	904	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60020.2	1754	7e-23	1281 - 1340	98	59 / 60	minus	ABC18021
JLOC1	JLOC1_39108.1	1345	4e-23	1281 - 1340	98	59 / 60	minus
Harvest35	U35_2425	990	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (990 bp)

>U35_2425 990 Hv_44K_v2
GCCAGAGCCTACAACAACGAGAAGGAGGTCGGTTTGGCTCTGAAGAAACTATTTGATGAG
GCTGTAGTCAAGCGTGAAGATCTGTTTATCACCTTTAAGCTATGGTGTGGTCATCATGCC
CCAGAAGATGTGCCCGAGGCACTTGGGGATTCCCTCAGTGACTTGCAGCTCGAGTACTTG
GATCTTTACCTTCGGCGGCGGCGGGGCCGCGGGCTGCGACGCCGCAGCGGAGGCCATCGA
TCGGGTTCGCTGCGGCGCGGGGTTCGCTGCTGCAGCGGAGCGCGAGCGAGTTCCCTTCTC
TTCTTCCTCGCTGGGCTTGGCGCAAGGGAACAAAATAGAATGGAGGAGGGTGGCAGCGGT
AGCTGTGCCGGTGCGCGCCGGCGGCGGCCCTCATGTCGGCGACGCAGTAGTCGACGAGGA
GGTCCGGGTCGGAGCTGCAGACGGCGGAGAAGAAGATGATCGTCACGAGCGAAAGGATGG
CTCGAGAGATGGGAGCGGCATGGTTGGTTGTGGCGCCCATGGCTACGCCTCGAACGTATG
ATCAGCGATCAGTACATTCAGCAGTCACGGCTCATGTGCGTATGATTGTATGCTCCTTGG
GCTTTGAGGAGTTGGCAGATGATGCTTTGAAGTTACTGTGGGTGCGAGTGGCTGCATTGG
CTACGTTACGTTACCATTGCCTTGGAGAATGAGACACATATACTTTTGATGATGGAGGGT
TTTCTTTTCAAGTCACTCTTGAACGTCGTGGTTAAGACTTGCTGAAAATCATGGGCTCAG
ACTTGCTATCTGAAATTCCATATCTCCTGTTGGAATCCACCTAAAACCTGTAGAACAGGA
AATTCACTGATGTAGCGGCAGTGTTGCGATGACATGGCATTGTGCAGTTTATTGCTACTT
GACCACGTAACATTGGATAGTTCAAACTTATAAGCATGCAACATTAGAATCGGAAGCAGC
AATATTTTCAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None