barSeed - Barley Seed Development Database

Probe CUST_41578_PI390587928

Source Contig U35_37194

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41578_PI390587928	Hv_44K_v2	TCAATACAATGCCCATGAATCAAAACTAGCGTATGGTTCCCTAGCTCCTACTGCTACTGG	200	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368262	4898	3e-22	4664 - 4719	100	56 / 56	minus	ABC11348 ABC32895
MLOC	MLOC_50197.1	887	3e-22	289 - 344	100	56 / 56	plus	ABC11348 ABC32895
JLOC1	JLOC1_32053.1	716	1e-22	327 - 382	100	56 / 56	plus
Harvest21	ABC32895	538	3e-25	201 - 260	100	60 / 60	plus	ABC32895
Harvest21	ABC11348	1264	5e-23	209 - 264	100	56 / 56	plus	ABC11348
Harvest35	U35_37194	538	3e-25	201 - 260	100	60 / 60	plus
Harvest35	U35_34682	750	5e-23	606 - 661	100	56 / 56	minus
Harvest35	U35_18593	1272	5e-23	1001 - 1056	100	56 / 56	minus

Contig Sequence (538 bp)

>U35_37194 538 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACTGCAAAAAGATACATTGGTCATACCCATAAAAAACCACCC
TACAGAATTGTAAGCATCAGTTCTGAAACCACAACAGACCAACATTCCCATCAGACGGAA
ATGCCATCAAAATCCAGCTAAAAACTCCCCAAAGCAACAAGGGTAAGACATCTAAATATT
TCCTGGGTAGAAGCAATCAATCAATACAATGCCCATGAATCAAAACTAGCGTATGGTTCC
CTAGCTCCTACTGCTACTGGTACGGGAGCAAACGACCGTCAAGGAGGCGGGTGGACCGTC
GGCCGAGGGCGCGGACAGGAAAAAAAAGCCGGAGGAGGCGCAGGTGAAATCGTCGCACGC
CGTAGAGCTTGTCATTCATGCTGGCAAGTTCTGAAATGAGTTTGGCAAATCAGTTAAGCT
GGGAATCATTGAAGATGCAACAAACAGGAACCGTCTTGCGAAGCTTCTCAGATTTGAGAG
GATGACCGTGGAAGGCACAGTCTTGACTATGGCCCTCCAGTGACTCCGGCATTTGATC

Homology of Contig U35_37194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None