barSeed - Barley Seed Development Database

Probe CUST_4156_PI390587928

Source Contig U35_2426

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4156_PI390587928	Hv_44K_v2	ACCTGCAGACCGACTACGTGGATCTATACCTCGTGCACTGGCCGATCCGGATGAAGAAAG	340	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77559.1	1331	2e-24	513 - 572	100	60 / 60	plus	ABC10053
MLOC	MLOC_77559.4	1478	2e-24	944 - 1003	100	60 / 60	minus	None
MLOC	MLOC_77559.5	1271	2e-24	721 - 780	100	60 / 60	minus	None
MLOC	MLOC_77559.2	1218	2e-24	760 - 819	100	60 / 60	minus	ABC10053
MLOC	MLOC_77559.3	1241	2e-24	739 - 798	100	60 / 60	minus	None
JLOC1	JLOC1_51723.2	1345	8e-25	409 - 468	100	60 / 60	plus
JLOC1	JLOC1_51723.1	1537	8e-25	391 - 450	100	60 / 60	plus
Harvest21	ABC21397	593	3e-25	341 - 400	100	60 / 60	plus
Harvest35	U35_2426	593	3e-25	341 - 400	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_2426 593 Hv_44K_v2
CTCCCGTCTGCGCGCGCACTTGCAAGTGTAGGCGAGCGACAAGGCATGGCTCTCCACTTC
GTCCTCAACACCGGCGCCAAGATCCCGTCCGTCGGGCTCGGCACCTGGCAGTCCGAGCCC
GGCGTCGTCGGCGACGCCGTCTACGCCGCCGTCAAGGCCGGTTATCGGCACATCGACTGT
GCTCAAGTCTACGGCAACGAGAAAGAGATCGGATTCGCTCTCAAGAAGGTGTTCGACGAG
GGCGTAACCACTCGGAAAGATCTTTTCATCACCTCCAAACTATGGTGCACTAACCACGCG
CCGGAGGACGTCCCGGTGGCGCTGGACGGCACGCTCCAGGACCTGCAGACCGACTACGTG
GATCTATACCTCGTGCACTGGCCGATCCGGATGAAGAAAGGCGCCGGCTTCAACCCGGAG
AACGTCATCCCGGCAGACATACCGGCGACGTGGGCGGCGATGGAGAGCCTCTACGACTCC
GGCAAGGCCCGCGCCATCGGCGTCAGCAACTTCTCGTGCAAGAAAGTGGAGGAGCTGCTC
GCCGTCGCGCGCGTGACGCCGGCGGCCAACCAGGTGGAGTGCCACCCCGTCTG

Homology of Contig U35_2426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38230.2	327	1e-110	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi2g54890.1	312	2e-96
Arabidopsis v10	AT2G37790.1	314	4e-96	NAD(P)-linked oxidoreductase superfamily protein \| chr2:15838838-15840752 FORWARD LENGTH=314