barSeed - Barley Seed Development Database

Probe CUST_41567_PI390587928

Source Contig U35_49176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41567_PI390587928	Hv_44K_v2	GTATGTGCTGGCCTATGCCAGTTATCCTTTTTAGTCCCAAGGAGTTTGAGGCTTAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17320.1	2232	3e-21	1817 - 1870	100	54 / 54	plus	ABC25221
JLOC1	JLOC1_11956.1	2049	2e-21	1817 - 1870	100	54 / 54	plus
Harvest35	U35_49176	478	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (478 bp)

>U35_49176 478 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAGCCTCAAACTCCTTGGGACTAAAAAGGATAACTGGCATAGG
CCAGCACATACCATCATTACAGTTTCTCTGTTAACCGAATCATGAAAGAACTGACAGCAA
CAACGTCAAGAACAATCCATGATGACTCAAACATGTCATGGAAATAGTCTGCCCCAATCT
CCTCTGCCGCTGACCTAAATGCATTCCCGAACGAATTCCCCTGAACTGCCCCAAGCCTGG
GCTTCCCCCATACCCCAACTACCAGCACCTTCTCAGGTTCCCTCCCTAAGCAAGCACACA
CCAGTGGCTTCATCCTTGCACCCCGCTCCTTCAGTGCATCCATCAGGAAGAAGCANAACT
TGGTCAGGGCCTGAGGGTGGCACAGCTTGCTCGTGTCCACTGGGTCATCAAGCTTCACCC
ACCGGAACTTCTTTGCACTCCGTATGAAGCCGCTCTTGGTGATGGCCGAGCTTCCTTG

Homology of Contig U35_49176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03130.1	605	6e-80	protein\|CDC45A - Putative DNA replication initiation protein, expressed
Brachypodium v1_2	Bradi4g43950.1	604	2e-82
Arabidopsis v10	AT3G25100.1	596	4e-62	\| Symbols: CDC45 \| cell division cycle 45 \| chr3:9144292-9146082 FORWARD LENGTH=596