barSeed - Barley Seed Development Database

Probe CUST_41563_PI390587928

Source Contig U35_49180

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41563_PI390587928	Hv_44K_v2	AATGTGATGAAAACGCCACTGATGTTTCTGCTAATGGATTTGATGCATTTATACTGGAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370604	702	7e-23	646 - 702	100	57 / 57	plus	ABC00009 ABC00020 ABC00026 ABC00030 ABC00035 ABC00037 ABC00059 ABC00117 ABC00122 ABC00131 ABC00139 ABC00140 ABC00142 ABC00153 ABC00159 ABC00160 ABC00163 ABC00172 ABC00173 ABC00174 ABC00175 ABC00180 ABC00197 ABC00202 ABC00203 ABC00234 ABC00250 ABC00316 ABC00434 ABC00488 ABC00499 ABC00500 ABC00576 ABC00659 ABC00665 ABC00695 ABC00700 ABC00724 ABC00877 ABC00980 ABC27134 ABC27412 ABC29158 ABC29958 ABC30671 ABC32179 ABC43349
MLOC	MLOC_75975.1	1070	7e-23	663 - 719	100	57 / 57	minus	ABC00576 ABC00659 ABC30671
JLOC1	JLOC1_50679.1	625	4e-23	220 - 276	100	57 / 57	minus
Harvest35	U35_49180	439	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (439 bp)

>U35_49180 439 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCAGTATAAATGCATCAAATCCATTAGCAGAAACATCAGTGGC
GTTTTCATCACATTACAAATTATCCTGCAAACAAGTAGTACGATTCATCCGAGGCTCCTG
GTAAATTATGGCAAACCAACTCATCGCCACCCACCAGCGAAACAAAATCAGGAACACCGA
TTGCACAGAGACAAGTTTCCTTTCCAACGACATACGCGATTAATTTTGTTCCACGATTCA
GTTCGAACTACAGAATCAGGAATAGCGAACCACAGAAGTCGTGGTTTCATCAAGCTTCGG
GAACCTGCAGGCGGCGACAAAGCCTGACGGCCCTAGCCGCCGAAGCCGTAGAGGGTGCGG
CCCTGGCGCTTGAGGGCGTANACAACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGC
TCGGTGTAGGTGACGGCGT

Homology of Contig U35_49180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None