barSeed - Barley Seed Development Database

Probe CUST_4155_PI390587928

Source Contig U35_2427

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4155_PI390587928	Hv_44K_v2	AAGCGTGAAGATCTGTTTATCACCTCTAAGCTATGGTGTGGTCATCATGCCCCAGAAGAT	363	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361758	1659	2e-24	999 - 1058	100	60 / 60	plus	None
MLOC	AK357863	1411	7e-23	382 - 441	98	59 / 60	plus	ABC08224
MLOC	AK364456	1358	7e-23	283 - 342	98	59 / 60	plus	ABC08224
Harvest21	ABC08222	486	3e-25	364 - 423	100	60 / 60	plus
Harvest21	ABC08223	1340	1e-23	358 - 417	98	59 / 60	plus
Harvest21	ABC08221	764	1e-23	70 - 129	98	59 / 60	plus
Harvest35	U35_2427	486	3e-25	364 - 423	100	60 / 60	plus
Harvest35	U35_2428	1461	1e-23	374 - 433	98	59 / 60	plus
Harvest35	U35_2425	990	1e-23	70 - 129	98	59 / 60	plus

Contig Sequence (486 bp)

>U35_2427 486 Hv_44K_v2
ACCACCGCATCCTTGGCCGCCTCCGCCCTCGGTGTCTCCTCCGACCTCGCCGTCTCGGGC
TGCTGCGTTGTTGGCGCCGGGGCCAGCGGAGGCCGCGTGGCCGCCGCCGCGGCTTCCGAG
GAAGACGGGAGGCGGAGCGGGACGAGCTTGCCCCCGGAGAAGAGCTCGTCGGCGGGGAGC
ATGGTGGACACGGCTGAGCAACCGGCGAGGAGGCCCTTTCCTCTTTCCATCCGCCCGATT
CGATTTCGTCTTCGGACTAAAACAAAAATCGTGCGTGCAGGCGGGATACCGGCACATCGA
CTGCGTGTCTGCGCCAGAGCCTACAACAACGAGAAGGAGAAACTATTTGATGAGGCTGTA
GTCAAGCGTGAAGATCTGTTTATCACCTCTAAGCTATGGTGTGGTCATCATGCCCCAGAA
GATGTGCCCGAGGCACTTGGGGATTCCCTCAGTGACTTGCAGCTCGAGTACTTGGATCTT
TACCTT

Homology of Contig U35_2427 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None