barSeed - Barley Seed Development Database

Probe CUST_41554_PI390587928

Source Contig U35_49189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41554_PI390587928	Hv_44K_v2	GGCCTGAAAGTGAAGAAGTGGAGTATATTTGTAGTAGTAGTTATATGTTGTGATAGTATC	94	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369556	738	2e-24	585 - 644	100	60 / 60	plus	ABC10764
MLOC	MLOC_3564.1	1434	3e-22	270 - 328	98	58 / 59	minus	ABC10764
MLOC	MLOC_3565.1	393	3e-22	61 - 119	98	58 / 59	minus	ABC10764
JLOC1	JLOC1_2145.1	1317	1e-22	153 - 211	98	58 / 59	minus
JLOC1	JLOC1_2144.1	380	1e-22	170 - 228	98	58 / 59	plus
Harvest21	ABC10764	791	5e-23	622 - 680	98	58 / 59	plus	ABC10764
Harvest35	U35_49189	441	3e-25	95 - 154	100	60 / 60	minus
Harvest35	U35_18638	816	5e-23	622 - 680	98	58 / 59	plus

Contig Sequence (441 bp)

>U35_49189 441 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAATGAAAATTATCAAACCACATGCCAATATTGGCTAATAGCA
CAATCTTTACATAATTCATTTCACCATTACATGTGATACTATCACAACATATAACTACTA
CTACAAATATACTCCACTTCTTCACTTTCAGGCCGAAGCTCCTTCAACGAGAGGAAACAC
CATTTCTGGATATGTTCGTACAGGTTGAACGAAGGCATCTACTGTGATTCAGCCGAGATG
CGAGGTGGCTGGGGAGGCAGAGAGGCGACACAGCCTACGTGGTCCGGTGGTCGGGAACTG
CGGCGAGGGAGTGCGACGGGGCAGCGGAGTCTGGTGAAAGGCGATTCAAGACGGGGCAAG
GCAGGCCGTGACGGTGGGGAGGGAGGGCTACCGCCGGAAGAGGACACTCAATGTCCGCCC
TGCGCCCACTCCCACCCGGCC

Homology of Contig U35_49189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None