- Probe CUST_41552_PI390587928
- Source Contig U35_49191
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41552_PI390587928 | Hv_44K_v2 | TTACTCTTTTAGTATATATAATCGGGCTCGCGTGAGTTATTAGTGGCCGCCACTCACGGT | 74 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.577 | 2.915 | 1.257 | 0.737 | 0.625 | 0.648 |
| Raw | 100.861 | 183.404 | 68.136 | 63.040 | 17.477 | 21.216 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366148 | 4863 | 2e-24 | 4747 - 4806 | 100 | 60 / 60 | plus | ABC08503 ABC10956 ABC35217 |
| Harvest35 | U35_49191 | 385 | 3e-25 | 75 - 134 | 100 | 60 / 60 | minus |
Contig Sequence (385 bp)
>U35_49191 385 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCGTTAGGCACCATTGCATTCCATTTGCATAACTGCAACGACT GCAGTACATCCGTGACCGTGAGTGGCGGCCACTAATAACTCACGCGAGCCCGATTATATA TACTAAAAGAGTAAAAAGAACGCTACTACACTTTGGGTATCCACTCGTCCCCCTGTATGA AGCTGGCGACGCTGTACACGTCGACGCGCTCCTTGGGCACCTGGCTGCTCCACGCCACCC GGCTTTGGCCGGCGCCGGGGCCCGCGCTGCCGTACTCGCCGTAGTAGAGCGTCTCGAGCG CGAAGTCGCCGCTCCATGGCATCCACCCGGCCGGCTGCACGATCTCGGCGAGCGTGCAGC CGACGAACACGGTGCGCGAGTACTC
Homology of Contig U35_49191 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |