barSeed - Barley Seed Development Database

Probe CUST_4154_PI390587928

Source Contig U35_2428

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4154_PI390587928	Hv_44K_v2	ACGGAACGGATCGTCCATCACATGCTAATAAAAATGGGGCCTTTTCGTTTGTTTAAAAAA	1390	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.438	2.069	0.949	0.998	0.605	0.695
Raw	1248.830	1574.881	697.829	1134.207	243.185	300.862

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61339.2	2905	9e-22	1428 - 1482	100	55 / 55	plus	ABC08224 ABC16232
MLOC	AK364456	1358	3e-21	1305 - 1358	100	54 / 54	plus	ABC08224
JLOC1	JLOC1_40078.1	1579	5e-22	1440 - 1494	100	55 / 55	plus
Harvest35	U35_2428	1461	3e-25	1391 - 1450	100	60 / 60	plus

Contig Sequence (1461 bp)

>U35_2428 1461 Hv_44K_v2
TACTCGACGACCGCCACCACCACCAAGCACCGGGACAGCCGTGCCGACGGCACCCGCTGC
CTATAAAGCGCCGCGCACCAACATCCCGTCCCGTTTCCGATTCGTCCCCGTCCCCTTCCT
TCCAGCGCCGTCTCCGAGACCGTGGCTGTGCGTGCGCCCGTGAGCGGGGATGGCGACGCA
CTTCGTGCTCAACACCGGCGCCAAGATCCCCTCCGTCGGGCTCGGCACATGGCAGTCCGA
CCCCGGCGTCGTCGGGGAGGCCGTCTACGCCGCCGTCAAGGCGGGATACCGGCACATCGA
CTGCGCCAGAGCCTACAACAACGAGAAGGAGGTCGGTTTGGCTCTGAAGAAACTATTTGA
TGAGGGTGTAGTCAAGCGCGAAGATCTGTTTATCACCTCTAAGCTATGGTGTGGTCATCA
TGCCCCAGAAGATGTGCCCGAGGCACTTGGGGATTCCCTCAGTGACTTGCAGCTTGAGTA
CTTGGATCTTTACCTTATCCATTGGCCATTTAAAATCAAGAAGGGAACAAGCATTGGCAA
CCCTGAAAACTTCTTACCACCTGACATACCAGCTACATGGGGAGCAATGGAGAAGTTGCA
TGATGCTGGCAAGGCTCGTGCAATTGGTGTGAGTAACTTCTCATCGAAGAAATTGGGTGA
CTTGCTTGCTGTAGCTCGCGTACCTCCGGCTGTTGACCAGGTGGAGTGCCATCCTAGTTG
GCAGCAATCTAAACTCCATAGCTTTTGTCAGTCGGCTGGTGTTCATCTCTCTGCGTACTC
ACCACTAGGTTCACCTGGTTCAACATGGATGAATGGTAATGTCCTCAAAGAACCAGTCGT
CCTCTCAATTGCTGAGAAGCTCGGCAAAACTCCTGCACAAGTGGCGTTGCGCTGGAACAT
TCAGATGGGTCACAGTGTACTCCCAAAGAGTGTGAGTGAAGAACGGATAAAGCAGAACCT
TAACGTTTATGACTGGTCTATTCCAGAAGACTTGCTTGCAAAGTTCTCTGAGATTAAGCA
GGGTAGGCTGCTCATGGGCAACTTCATCGTCAACAAAAACAGCGTTTACAAGACCCACGA
CGAGCTGTGGGACGGCGAAATCTAGGACTGCTCCCGGTCGTGGCCGGTTCCGCCGCCCCA
GACCAGAGAGCAGGGCGCCCTGCTAGCGTCAGTCACTTGTTATGTATCGCCGACCAACCT
ACGCGCTTAAGGAATGTAATACTAGAATGATTCAGCGCCCCCTGGGGCTGGGGGTCTGGG
GGCTCTTGGGTGGACTGCTGCATGGATCGCTCGTGCAGTGATGTAATTTCTGCTAGTACT
GTGTTGCCGATGGAGGCATGAATTTATCCTGTAGCTCTTCCAGCCACTTTTTTTTTTTTG
TTTCTTCTGTACGGAACGGATCGTCCATCACATGCTAATAAAAATGGGGCCTTTTCGTTT
GTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62870.1	312	0.0	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi2g54890.1	312	0.0
Arabidopsis v10	AT2G37790.1	314	5e-163	NAD(P)-linked oxidoreductase superfamily protein \| chr2:15838838-15840752 FORWARD LENGTH=314