barSeed - Barley Seed Development Database

Probe CUST_41547_PI390587928

Source Contig U35_49198

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41547_PI390587928	Hv_44K_v2	CGCCACTAGAATCTCTGTCAGGAATTCCAAACCCATATAAACATTATTGATTTGTCAAAA	13	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.044	1.729	1.974	1.034	0.346	0.435
Raw	346.477	848.903	896.733	733.524	83.872	118.272

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70904.1	2935	7e-23	30 - 86	100	57 / 57	minus	None
MLOC	MLOC_70904.2	2800	7e-23	15 - 71	100	57 / 57	minus	None
JLOC1	JLOC1_47077.1	2830	4e-23	2764 - 2820	100	57 / 57	plus
Harvest35	U35_49198	422	3e-25	14 - 73	100	60 / 60	minus

Contig Sequence (422 bp)

>U35_49198 422 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACAAATCAATAATGTTTATATGGGTTTGGAATTCCTGACAGA
GATTCTAGTGGCGCAAATAATATTTGCCTATACAAACTATATAGAAAATGAAAAAGAAGG
GTGATCCCTTCAACTTATAAATGAATCAAAAAACTATCAAAACAACTAAACCTCAATGTA
ACAATCTTCTTTCCTCTCTAATCCATCCAAGTCGGCCACTGCTCTACTCGTTGCTTGCAG
AAGCAACATGGCCTTCCTCGCTCGGTCCGGCGGCGCCGCCCTCCGGTCCAGGCCGAATCT
CCTCGAGCTGCCGCAGCACCTCCCGCGCCTCCGGCCTGGCCGACGGCGAGACCTCGACGC
ACTGCAGCGCCAGCTTGAGCGTGTCCATGAGCTCGTCCCCCTCCGGGCCGGCGGCCGTGT
CC

Homology of Contig U35_49198 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None