barSeed - Barley Seed Development Database

Probe CUST_41545_PI390587928

Source Contig U35_8100

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41545_PI390587928	Hv_44K_v2	TTGTGAGTGTAAAAATATTGGTCAGATGAAATGAAATGAATGGGGTGTAAAGATACACAC	343	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44779.1	4563	2e-24	4330 - 4389	100	60 / 60	plus	ABC35357
MLOC	MLOC_44779.2	4416	2e-24	4176 - 4235	100	60 / 60	plus	ABC35357
JLOC1	JLOC1_29043.2	3809	8e-25	3683 - 3742	100	60 / 60	plus
JLOC1	JLOC1_29043.1	4326	8e-25	4200 - 4259	100	60 / 60	plus
Harvest21	ABC35357	463	3e-25	339 - 398	100	60 / 60	plus	ABC35357
Harvest35	U35_8100	475	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_8100 475 Hv_44K_v2
GAGGGTGCTTTGGGAGATCCTGACGGGGGAGGAGCCCTATGCCAACATGCACTATGGCGC
AATTATAGGTGGCATCGTGAACAACACGCTGCGGCCACCGGTGCCGGCCAACTGCGGGCC
GGACTGGAGGAGGCTGATGGAGCAGTGCTGGTCGCCGGACCCGTCACAGCGGCCGGCCTT
CACGGAGATCGCTGCGCGGCTGCGGTCCATGTCAGCTGCGGCCAACCAGCAGGCCAAGGC
AGCTGCAGCGGCCAAGTAGAAATACAAATCGCCGGCTGTGGGTATGGGGTGGTGTATGTA
TTGCCTGTCTGTCTGCCTGCCTGCCTGCCTGTCTGTTATAGAGTTGTGAGTGTAAAAATA
TTGGTCAGATGAAATGAAATGAATGGGGTGTAAAGATACACACATATTATGTATTATTAT
TATTATTATATGAACAACAACAATTTTATATAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_8100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None