barSeed - Barley Seed Development Database

Probe CUST_41544_PI390587928

Source Contig U35_8101

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41544_PI390587928	Hv_44K_v2	CTATCCATGGTTCGTATGTTGTGGGGCAGATATTGTTGAGTAAACAGGCAGAATTTTCAT	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64633.1	2078	3e-22	1 - 59	98	58 / 59	minus	ABC17178
Harvest21	ABC17178	642	3e-25	557 - 616	100	60 / 60	plus	ABC17178
Harvest35	U35_8101	642	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_8101 642 Hv_44K_v2
GCTGGTGGAGCCCGTGGCGCGGTGGATCGAGGAGGTGATGCCGGGCCGCGTGGAGACCGC
GGGCGGGCCGGTGATCCGGCAGCCGTGCATGTACTCCATGACGCCCGACGAGGACTTCGT
CATCGACTTCCTCGGCGGCGACGAGTTCGGGAGGGACGTGGTGGTCGGCGCCGGCTTCTC
CGGCCACGGGTTCAAGATGGGCCCGGCGGTGGGCAGGATCCTGGCGGAGATGGCGCTGGA
CGGCGAGTCGGGGACGGCCGCGGAGGCCGGCGTGGAGCTCCGGCACTTCAGCATCGGCCG
GTTCGACGGCAACCCGACGGGGAACGCCAGGGGTTTCTGAGCCGAGGCATGGATGGATGG
ATGTTTGGAGCGCGAGCATCAGATGTGGTTGCGTGTAATTATGGTCCTTAATTATGTCGA
CGTGTTAATTGTCGCAGTTTGCCAATTGGTACTCCGTGTATGTGTTTGCCAAATAATCTG
TGCACCGTGTGCAACTTTGGAACAGTAAAGTAATTATTTTGTGAGCTTTGGGACAGTGAA
GTGACGCATGTTTTACCTATCCATGGTTCGTATGTTGTGGGGCAGATATTGTTGAGTAAA
CAGGCAGAATTTTCATTTTAAAAAAAAAAAAGAAAAAAAAAA

Homology of Contig U35_8101 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32290.1	147	1e-62	protein\|FAD dependent oxidoreductase domain containing protein, expressed
Brachypodium v1_2	Bradi4g34200.1	421	3e-61
Arabidopsis v10	None