barSeed - Barley Seed Development Database

Probe CUST_41541_PI390587928

Source Contig U35_1879

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41541_PI390587928	Hv_44K_v2	AATCAACGACAATTGATATGGATTCTGAGGGAGCAGTACAATATGGTAGCGTGGGCATCC	2219	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60821.3	3380	2e-24	19 - 78	100	60 / 60	minus	ABC13002
MLOC	MLOC_60821.1	4793	2e-24	39 - 98	100	60 / 60	minus	ABC13002
MLOC	MLOC_60821.2	3131	2e-24	30 - 89	100	60 / 60	minus	ABC13002
JLOC1	JLOC1_39697.11	2524	8e-25	2426 - 2485	100	60 / 60	plus
JLOC1	JLOC1_39697.10	2547	8e-25	2449 - 2508	100	60 / 60	plus
JLOC1	JLOC1_39697.9	2552	8e-25	2454 - 2513	100	60 / 60	plus
JLOC1	JLOC1_39697.8	2459	8e-25	2361 - 2420	100	60 / 60	plus
JLOC1	JLOC1_39697.7	2459	8e-25	2361 - 2420	100	60 / 60	plus
JLOC1	JLOC1_39697.6	2491	8e-25	2393 - 2452	100	60 / 60	plus
JLOC1	JLOC1_39697.5	2994	8e-25	2896 - 2955	100	60 / 60	plus
JLOC1	JLOC1_39697.4	2509	8e-25	2411 - 2470	100	60 / 60	plus
JLOC1	JLOC1_39697.3	3250	8e-25	3152 - 3211	100	60 / 60	plus
JLOC1	JLOC1_39697.2	2315	8e-25	2217 - 2276	100	60 / 60	plus
JLOC1	JLOC1_39697.1	2257	8e-25	2159 - 2218	100	60 / 60	plus
Harvest21	ABC13002	1211	3e-25	29 - 88	100	60 / 60	minus	ABC13002
Harvest35	U35_1879	2558	3e-25	2220 - 2279	100	60 / 60	plus

Contig Sequence (2558 bp)

>U35_1879 2558 Hv_44K_v2
GCCTCATCCCCCCTCCCCCACTATCCAACAGAGCAGCCCACGCTCTGCGCCACCTCCTCG
ACCGACCCGATCGCTCCCCGCCGCCGGCGCCATGGAATCCAGCGACCCCAGCTCCGCCGC
AGGAAATAAGACGGAAGAAATATCTGTACCACCTGTGGAGGGTGTAGCTGGAGGAGGGAC
TAGTTATGGCTGGGTGCATGGAGGCTTACAGGGGTCTCATCTAGGTACTAGTGTGATTGA
CCCTACAAAGGTACATTCGACAGATCTTTTGCATGTGTGGTCTATGCCCAGCACAGCAAA
TGTTAGCCAACAAGAAGCACCTCGACCTCTAGAACAGGTCAACCTTTTGGCGGCAAGAAA
TGAAAGAGAAAGTTTTCAAATCGCATTACGTCCAAAGGTTTCATGGGTTTCAGGTATTGC
AGGGCCTGTGCAGATGCAGTGCACTGATCTATGCTCATCCACTGGAGGCAGGTTAGTGGT
TGGTCAATCTATAACGCTGCGACGTGTGGTGCCTATATTAGGTGTACCAGATGCTCTTGT
GCCTATTGATCCGTCGAGTCCTCAAATAAACCTACTTCCTGGGGAGACAACTGCAGTATG
GATCTCACTAAATGTTCCTTGTGGGCAACAGCCTGGTCTATATGAAGGAGAAATATTTAT
TACTGCTGTGAGGGCAGATTCAGATTCCAGGGCAGACTCGTTACTAAAATCTGAGAGATA
CCAGCTGTATAAAGGATTAAAGACTTGTCTTGACATCACTGAATCCAGAGACCACTTGTC
GTCAGAGGAAATGATACTAAGACTATCATCAACTTCAACTACACTGAGGAGGATGCTAGT
ACTTCCAGCATTCCAGGACTACCATGAGAATAATGGATTAGGAGACATGATGGATGAAGA
TGTTCTGAACAATGTTGCTGTTCGTGTCAAGTTAAGCCTGACTGTGTGGGATTTCACTCT
CCCACTCACACCTTCTTTACCTGCTGTTTTTGGTATATCTGAAACTGTCATTGAAGATCG
GTTTTGTTTGGAGCATGGCACCAAAGGGTGGTATGATGCACTGGATCATCACTTCGGGTG
GCTCCTCCAGTACAGAATCAGTCCATTTTTCTGCAGATGGGGCGATAGCATGCGTATTCT
TGCATACACATGCCCTTGGCCTGCTGATCATCCAAAGGCTAATGAATATTACTCTGATCC
AAGACTCGCAGCATATGCTGTACCGTATGCGCCTATTCTGTCGTGTACGGATGCAGCAAA
AAATTCTCTGCGAAGAGAGGTTGAAATCTTGAAAACAGAGCCTCATTGGTCGAAAGCTTA
CTTCTACTTGTGGGATGAGCCATTGAATATGGAGCAGTACGAAGTGATCTGCAACATCTC
TAATGAGTTAAGGACATACACACCTGATGTGCGTATTTTAACAACTTATTATGCTGGTCC
AAGTGGTTCTGAACTGGCTCCTTCTACGTTTGAGGCTTTTGCGAAAGTTCCAAATGTTCT
ACGTCCGCATACACAAATCTTTTGCACTAGTGAATGGGTTCTTGGCACAAGAGAGGACTT
AGTGAAGGATATTATTGCCGAACTACGACCTGACCTTGGTGAAGAGTGGTGGACATATGT
TTGTATGGGCCCTTCTGATCCTCAACCAAATTGGCACCTTGGGATGCGCGGAACCCAGCA
TCGGGCAGTGATGTGGAGAGCATGGAAGGAGGGTGGCACAGGATTTCTCTACTGGGGTAC
CAACTGCTACGAGAAGGCTATGATTCCAAGTGCAGAGATCTGTTTCCGACGCGGCCTTCC
TCCAGGCGACGGGGTTCTGTTTTACCCTGGTGAGGTGTTTTCTTCGTCGAAGGAACCAGT
TGCATCCCTCAGGCTTGAACGCATTCTCAGTGGCATGCAGGACATTGAATACTTGAACCT
TTACTCCTCAAAGTACGGCAGGGAGGAGGCCTTGGCCCTCCTGGAGAAGACCGGCGCGTA
TCTTGGCCCGGATCGCTATGCACATGATCATGGGCCAGTCGACGTGATGCGCGGTGAGGT
ATACCGCACCTGCAGTTCTTAGGGCAGCCATGGGTACCTGTCATTGTCGTTCTTTTCTTC
CATTGCAGCACATCTGTTGTTGTACATGGCTTGTTATACACTGTATTAGCCAACTGATGA
AATACAGCACTTTTGATCAAACTCGTCAATGCTAATAGTAGTTGTAGATACTTGTACTAA
ATCAACGACAATTGATATGGATTCTGAGGGAGCAGTACAATATGGTAGCGTGGGCATCCG
AGCCAGCGGCCGCTCGGCGATTTATTCAACATAAACTGAATGTGCTTTCAGCAACATGTT
GTAGAAAGAGGGAGATCACAGCTTTATCTGACAGAAACACAAGACACTAAGCTACAGAAG
TATAGTGTGCTCGGGCATCCGACCATCAATACTTCCAGTTTACAAGAACAATTCACACAA
TAGGAGACTCCAGAATGGTGCGCGGAATTGCAGTTACAAGGCAGTCATGACTCATGANGA
CTGCCCTCTCGCAGACAGCACAAGTCGACGATCAGATC

Homology of Contig U35_1879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g39300.2	658	protein\|expressed protein
Brachypodium v1_2	Bradi1g23480.1	658
Arabidopsis v10	AT1G45150.1	643	unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). \| chr1:17077615-17082330 REVERSE LENGTH=643