- Probe CUST_41538_PI390587928
- Source Contig U35_702
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41538_PI390587928 | Hv_44K_v2 | TAACTAGCTAGAGGGACCGAGCGAGTAAATAACAGGAATGCCGTACTAAGCCATGTATTC | 626 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.961 | 2.948 | 0.711 | 0.622 | 1.328 | 1.188 |
| Raw | 3.221 | 11.880 | 3.019 | 5.416 | 3.511 | 3.905 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251990.1 | 734 | 7e-23 | 611 - 670 | 98 | 59 / 60 | plus | ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 |
| MLOC | MLOC_48531.1 | 531 | 7e-23 | 161 - 220 | 98 | 59 / 60 | minus | ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 |
| MLOC | MLOC_76654.1 | 912 | 3e-21 | 82 - 141 | 97 | 58 / 60 | minus | ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 |
| JLOC1 | JLOC1_31158.1 | 524 | 4e-23 | 154 - 213 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_51116.1 | 976 | 2e-21 | 186 - 245 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC02210 | 707 | 1e-23 | 596 - 655 | 98 | 59 / 60 | plus | ABC02210 |
| Harvest35 | U35_702 | 689 | 3e-25 | 627 - 686 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_704 | 707 | 1e-23 | 596 - 655 | 98 | 59 / 60 | plus |
Contig Sequence (689 bp)
>U35_702 689 Hv_44K_v2 GGGGACAAAAGCATAGCCAGCTAGCTACGGCCTACACATACGCAGGCACAAAGAAATCAT TTAGACACCAAACCCAGAATGGAGACGCCCAAGCTGGCCATTTTGCTCGCCCTAGCCATG GCAGCCGCCATGGTTAATCTTTCCCAAGCGCAAAACTCACCTCAGGACTACCTTTCACCC CACAACGCCGCCCGCGCTGCCGTCGGCGTGGGCGCAGTGAGCTGGAGCACGAAGCTGCAG GCGTACGCCCAGAGCTACGCCAACCAGAGGATCGGCGACTGCAAGCTCCAGCACTCCGGC GGGCCCTACGGGGAGAACATCTTCTGGGGGTCGGCCGGCGCGGACTGGAAGGCGGCGGAC GCGGTGAAGCTGTGGGTGGACGAGAAGAAGGATTACGACTACGGGTCCAACACCTGTGCA GGGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGC TGCGCTCGCGTCGTCTGCAACAACAACGGCGGCGTCTTCATCACCTGCAACTACGAGCCC CGCGGGAATATCATTGGACAGAAACCATACTAACCGTGATGCACGTCATCGTCTCTCGTC CCTAATCTCATGCACCTTCGAATTCCTAACTAGCTAGAGGGACCGAGCGAGTAAATAACA GGAATGCCGTACTAAGCCATGTATTCCAT
Homology of Contig U35_702 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g28500.1 | 168 | 2e-76 | protein|SCP-like extracellular protein, expressed |
| Brachypodium v1_2 | Bradi1g57540.1 | 172 | 3e-59 | |
| Arabidopsis v10 | AT2G14610.1 | 161 | 2e-52 | | Symbols: PR1, PR 1, ATPR1 | pathogenesis-related gene 1 | chr2:6241944-6242429 REVERSE LENGTH=161 |