- Probe CUST_41535_PI390587928
- Source Contig U35_704
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41535_PI390587928 | Hv_44K_v2 | AATAAAAGGAATGCCGTACTAAGCCATGTATTCCATCCTGGACTATAATAAATAATGAGC | 622 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.053 | 2.539 | 0.899 | 0.628 | 1.302 | 1.159 |
| Raw | 4.464 | 10.727 | 5.101 | 5.245 | 3.760 | 3.655 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251990.1 | 734 | 2e-24 | 638 - 697 | 100 | 60 / 60 | plus | ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 |
| MLOC | MLOC_48531.1 | 531 | 2e-24 | 134 - 193 | 100 | 60 / 60 | minus | ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 |
| MLOC | MLOC_76654.1 | 912 | 7e-23 | 55 - 114 | 98 | 59 / 60 | minus | ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 |
| JLOC1 | JLOC1_31158.1 | 524 | 8e-25 | 127 - 186 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_51116.1 | 976 | 4e-23 | 159 - 218 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC02210 | 707 | 3e-25 | 623 - 682 | 100 | 60 / 60 | plus | ABC02210 |
| Harvest35 | U35_704 | 707 | 3e-25 | 623 - 682 | 100 | 60 / 60 | plus |
Contig Sequence (707 bp)
>U35_704 707 Hv_44K_v2 CTGGTATAGAGCAGGCCCATAGAAATCATTTATACACCGAACCGAGAATGCAGACGCCCA AGCTAGCCATCTTGCTCGCCCTAGCCATGGCAGCCGCCATGGTTAACCTTTCCCAGGCGC AGAACTCGCCGCAGGACTACGTCTCACCCCACAACGCTGCCCGCTCCGCCGTCGGCGTGG GCGCCGTGAGCTGGAGCACGAAGCTGCAGGCGTTCGCCCAGAACTACGCCAACCAGAGGA TCAACGACTGCAAGCTCCAGCACTCGGGCGGGCCGTACGGGGAGAACATCTTCTGGGGGT CGGCTGGCGCGGACTGGAAGGCATCGGACGCGGTGAACTCGTGGGTGAGCGAGAAGAAGG ACTACGACTACGGCTCCAACACCTGCGCGGCGGGGAAGGTGTGCGGGCACTACACTCAGG TGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCTCGCGTCGTCTGCAACAACAACCGCG GCGTCTTCATCACCTGCAACTACGAGCCCCGCGGGAATATCATTGGACAGAAACCATACT AACCGTGATGCACGTCATCGTCTCTCGTCCCTAATCTCATGCACCTTCGAATTCCTAACT AGCTAGAGGGACCGAGCGAGTAAATAAAAGGAATGCCGTACTAAGCCATGTATTCCATCC TGGACTATAATAAATAATGAGCATTTATATAAAAAAAAAAAAAAAAA
Homology of Contig U35_704 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g28500.1 | 168 | 1e-75 | protein|SCP-like extracellular protein, expressed |
| Brachypodium v1_2 | Bradi1g57540.1 | 172 | 9e-61 | |
| Arabidopsis v10 | None |